1 HisKA#1
309-375 aa · 67 aa · 12.6% of protein
Raw token
HisKA:309:0.0000000000000129:375:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DCQ02_RS08800
Histidine kinase, Classic
Clostridioides difficile · GCF_002165175
ClassHKTypeClassicLength530 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002165175#DCQ02_RS08800Stable P2CS identifier used across views.
GenomeGCF_002165175Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length530 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage153 / 530 aa (28.9%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa530 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
428-513 aa · 86 aa · 16.2% of protein
Raw token
HATPase_c:428:0.000000092:513:90:109- Raw architecture: HisKA:309:0.0000000000000129:375:67:64#HATPase_c:428:0.000000092:513:90:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002165175::NZ_NGUX01000010.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span55136-57413Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCA168_RS08760RefSeq proteinWP_045146670.1
Context group ID
GCF_002165175::NZ_NGUX01000010.1::G00002Context members
DCQ02_RS08795DCQ02_RS08800
Partner locus tags
DCQ02_RS08795DCQ02_RS08800
Partner old locus tags
CA168_RS08755CA168_RS08760
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_045146670.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDCQ02_RS08800Primary locus identifier stored in the genes table.
Old locus tagCA168_RS08760Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NGUX01000010.1Sequence record reported by the local genomic context database.
Genomic interval55 821-57 413 nt1 593 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span55 136-57 413 ntGCF_002165175::NZ_NGUX01000010.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002165175::NZ_NGUX01000010.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NGUX01000010.1All displayed genes belong to this local TCS context.
Neighborhood span55 136-57 413 nt2 278 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
55 136 nt57 413 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DCQ02_RS08795GCF_002165175#DCQ02_RS08795
RROmpR
55 136-55 852 nt · Forward (+)
DCQ02_RS08800GCF_002165175#DCQ02_RS08800
HKClassicCurrent focus
55 821-57 413 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001704795#DCQ01_RS00705Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1356136
Simplified PFAM architecture for HKOC_1356136
PFAM domain coverage: 190 / 530 aa (35.8%)
1 aa530 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[255-295] | HisKA[310-375] | HATPase_c[427-509]
- Domain count: 3
- Matched identifier: HKOC_1356136
- Positioned domains: HAMP 255-295 ; HisKA 310-375 ; HATPase_c 427-509
Cluster members and taxonomy
Representative gene: GCF_001704795#DCQ01_RS00705
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002165175
AssemblyASM216517v1 · Scaffoldhaploid
Genome composition4 163 281 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 93 · HK 41 · RR 50CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key