1 Response_reg#1
4-120 aa · 117 aa · 49.6% of protein
Raw token
Response_reg:4:1.09e-22:120:119:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DCQ05_RS08420
Response regulator LytTR family
Clostridioides difficile · GCF_002165155
ClassRRTypeLytTRLength236 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002165155#DCQ05_RS08420Stable P2CS identifier used across views.
GenomeGCF_002165155Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length236 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage202 / 236 aa (85.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa236 aa
Domain-by-domain annotation2 items
2 LytTR#2
141-225 aa · 85 aa · 36.0% of protein
Raw token
LytTR:141:1.22e-18:225:92:98- Raw architecture: Response_reg:4:1.09e-22:120:119:111#LytTR:141:1.22e-18:225:92:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002165155::NZ_NGUY01000007.1::G00052
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span140601-141311Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCA169_RS08390RefSeq proteinWP_021374557.1
Context group ID
GCF_002165155::NZ_NGUY01000007.1::G00052Context members
DCQ05_RS08420
Partner locus tags
DCQ05_RS08420
Partner old locus tags
CA169_RS08390
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021374557.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDCQ05_RS08420Primary locus identifier stored in the genes table.
Old locus tagCA169_RS08390Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NGUY01000007.1Sequence record reported by the local genomic context database.
Genomic interval140 601-141 311 nt711 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span140 601-141 311 ntGCF_002165155::NZ_NGUY01000007.1::G00052
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002165155::NZ_NGUY01000007.1::G00052Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NGUY01000007.1All displayed genes belong to this local TCS context.
Neighborhood span140 601-141 311 nt711 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
140 601 nt141 311 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DCQ05_RS08420GCF_002165155#DCQ05_RS08420
RRLytTRCurrent focus
140 601-141 311 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000449185#QCW_RS03050Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0989900
Simplified PFAM architecture for RROC_0989900
PFAM domain coverage: 200 / 236 aa (84.7%)
1 aa236 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-119] | LytTR[142-225]
- Domain count: 2
- Matched identifier: RROC_0989900
- Positioned domains: Response_reg 4-119 ; Response_reg 4-119 ; LytTR 142-225 ; LytTR 142-225
Cluster members and taxonomy
Representative gene: GCF_000449185#QCW_RS03050
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002165155
AssemblyASM216515v1 · Scaffoldhaploid
Genome composition3 991 143 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 92 · HK 41 · RR 49CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key