1 Response_reg#1
11-125 aa · 115 aa · 42.0% of protein
Raw token
Response_reg:11:3.26e-23:125:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DCQ05_RS05235
Response regulator Spo0A family
Clostridioides difficile · GCF_002165155
ClassRRTypeSpo0ALength274 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002165155#DCQ05_RS05235Stable P2CS identifier used across views.
GenomeGCF_002165155Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regSpo0A_C
Protein length274 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage219 / 274 aa (79.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Spo0A_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa274 aa
Domain-by-domain annotation2 items
2 Spo0A_C#2
163-266 aa · 104 aa · 38.0% of protein
Raw token
Spo0A_C:163:6.76e-66:266:104:104- Raw architecture: Response_reg:11:3.26e-23:125:115:111#Spo0A_C:163:6.76e-66:266:104:104
- Domain description: 1 Response_reg,1 Spo0A_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002165155::NZ_NGUY01000004.1::G00042
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span115423-116247Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCA169_RS05235RefSeq proteinWP_021374917.1
Context group ID
GCF_002165155::NZ_NGUY01000004.1::G00042Context members
DCQ05_RS05235
Partner locus tags
DCQ05_RS05235
Partner old locus tags
CA169_RS05235
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021374917.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDCQ05_RS05235Primary locus identifier stored in the genes table.
Old locus tagCA169_RS05235Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NGUY01000004.1Sequence record reported by the local genomic context database.
Genomic interval115 423-116 247 nt825 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span115 423-116 247 ntGCF_002165155::NZ_NGUY01000004.1::G00042
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002165155::NZ_NGUY01000004.1::G00042Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NGUY01000004.1All displayed genes belong to this local TCS context.
Neighborhood span115 423-116 247 nt825 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
115 423 nt116 247 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DCQ05_RS05235GCF_002165155#DCQ05_RS05235
RRSpo0ACurrent focus
115 423-116 247 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000449185#QCW_RS05800Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Spo0A_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0606374
Simplified PFAM architecture for RROC_0606374
PFAM domain coverage: 218 / 274 aa (79.6%)
1 aa274 aa
Response_regSpo0A_C
- Simplified architecture: Response_reg + Spo0A_C
- Raw architecture: Response_reg[11-124] | Spo0A_C[163-266]
- Domain count: 2
- Matched identifier: RROC_0606374
- Positioned domains: Response_reg 11-124 ; Response_reg 11-124 ; Spo0A_C 163-266 ; Spo0A_C 163-266
Cluster members and taxonomy
Representative gene: GCF_000449185#QCW_RS05800
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002165155
AssemblyASM216515v1 · Scaffoldhaploid
Genome composition3 991 143 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 92 · HK 41 · RR 49CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key