1 HAMP#1
188-258 aa · 71 aa · 14.3% of protein
Raw token
HAMP:188:3.04e-17:258:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BK730_RS01990
Histidine kinase, Classic
Bacillus wiedmannii · GCF_002147065
ClassHKTypeClassicLength496 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002147065#BK730_RS01990Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length496 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage246 / 496 aa (49.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa496 aa
Domain-by-domain annotation3 items
2 HisKA#2
270-334 aa · 65 aa · 13.1% of protein
Raw token
HisKA:270:0.0000000000000198:334:65:643 HATPase_c#3
383-492 aa · 110 aa · 22.2% of protein
Raw token
HATPase_c:383:4.41e-31:492:110:109- Raw architecture: HAMP:188:3.04e-17:258:71:69#HisKA:270:0.0000000000000198:334:65:64#HATPase_c:383:4.41e-31:492:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002147065::NZ_NFDE01000003.1::G00007
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span51766-53256Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBK730_01990RefSeq proteinWP_088092033.1
Context group ID
GCF_002147065::NZ_NFDE01000003.1::G00007Context members
BK730_RS01990
Partner locus tags
BK730_RS01990
Partner old locus tags
BK730_01990
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_088092033.1Primary protein accession used for annex mappings.
UniProt accessionA0A2A7W5S4Primary UniProt accession resolved in the annex database.
UniProt IDA0A2A7W5S4_9BACIDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBK730_RS01990Primary locus identifier stored in the genes table.
Old locus tagBK730_01990Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NFDE01000003.1Sequence record reported by the local genomic context database.
Genomic interval51 766-53 256 nt1 491 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span51 766-53 256 ntGCF_002147065::NZ_NFDE01000003.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002147065::NZ_NFDE01000003.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NFDE01000003.1All displayed genes belong to this local TCS context.
Neighborhood span51 766-53 256 nt1 491 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
51 766 nt53 256 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BK730_RS01990GCF_002147065#BK730_RS01990
HKClassicCurrent focus
51 766-53 256 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002147065#BK730_RS01990The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1499591
Simplified PFAM architecture for HKOC_1499591
PFAM domain coverage: 229 / 496 aa (46.2%)
1 aa496 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[206-258] | HisKA[270-334] | HATPase_c[383-493]
- Domain count: 3
- Matched identifier: HKOC_1499591
- Positioned domains: HAMP 206-258 ; HisKA 270-334 ; HATPase_c 383-493
Cluster members and taxonomy
Representative gene: GCF_002147065#BK730_RS01990
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 890 302 · GCF_002147065
AssemblyASM214706v1 · Contighaploid
Genome composition5 921 110 bp · 35,0% GCBacillus wiedmannii
Signal transduction countsGenes 121 · HK 64 · RR 57CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key