1 HisKA#1
108-175 aa · 68 aa · 20.2% of protein
Raw token
HisKA:108:0.0000000000000181:175:68:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BK729_RS04020
Histidine kinase, Classic
Bacillus thuringiensis serovar wratislaviensis · GCF_002146695
ClassHKTypeClassicLength337 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002146695#BK729_RS04020Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length337 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 337 aa (53.7%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa337 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
221-333 aa · 113 aa · 33.5% of protein
Raw token
HATPase_c:221:1.3e-28:333:113:109- Raw architecture: HisKA:108:0.0000000000000181:175:68:64#HATPase_c:221:1.3e-28:333:113:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002146695::NZ_NFDD01000013.1::G00013
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3114-4830Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBK729_04020RefSeq proteinWP_142287453.1
Context group ID
GCF_002146695::NZ_NFDD01000013.1::G00013Context members
BK729_RS04020BK729_RS04025
Partner locus tags
BK729_RS04020BK729_RS04025
Partner old locus tags
BK729_04020BK729_04025
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_142287453.1Primary protein accession used for annex mappings.
UniProt accessionA0A1C3ZH43Primary UniProt accession resolved in the annex database.
UniProt IDA0A1C3ZH43_BACTUDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBK729_RS04020Primary locus identifier stored in the genes table.
Old locus tagBK729_04020Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NFDD01000013.1Sequence record reported by the local genomic context database.
Genomic interval3 114-4 127 nt1 014 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 114-4 830 ntGCF_002146695::NZ_NFDD01000013.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002146695::NZ_NFDD01000013.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NFDD01000013.1All displayed genes belong to this local TCS context.
Neighborhood span3 114-4 830 nt1 717 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 114 nt4 830 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BK729_RS04020GCF_002146695#BK729_RS04020
HKClassicCurrent focus
3 114-4 127 nt · Reverse (-)
BK729_RS04025GCF_002146695#BK729_RS04025
RROmpR
4 117-4 830 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002146695#BK729_RS04020The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2844696
Simplified PFAM architecture for HKOC_2844696
PFAM domain coverage: 176 / 337 aa (52.2%)
1 aa337 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[109-174] | HATPase_c[222-331]
- Domain count: 2
- Matched identifier: HKOC_2844696
- Positioned domains: HisKA 109-174 ; HATPase_c 222-331
Cluster members and taxonomy
Representative gene: GCF_002146695#BK729_RS04020
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 180 878 · GCF_002146695
AssemblyASM214669v1 · Contighaploid
Genome composition5 981 618 bp · 35,0% GCBacillus thuringiensis serovar wratislaviensis
Signal transduction countsGenes 113 · HK 60 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key