1 HAMP#1
157-226 aa · 70 aa · 14.5% of protein
Raw token
HAMP:157:0.00000000000000147:226:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BK703_RS11845
Histidine kinase, Classic
Bacillus thuringiensis serovar silo · GCF_002146395
ClassHKTypeClassicLength483 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002146395#BK703_RS11845Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length483 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage243 / 483 aa (50.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa483 aa
Domain-by-domain annotation3 items
2 HisKA#2
251-316 aa · 66 aa · 13.7% of protein
Raw token
HisKA:251:0.00000000000111:316:66:643 HATPase_c#3
367-473 aa · 107 aa · 22.2% of protein
Raw token
HATPase_c:367:2.2e-17:473:108:109- Raw architecture: HAMP:157:0.00000000000000147:226:70:69#HisKA:251:0.00000000000111:316:66:64#HATPase_c:367:2.2e-17:473:108:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002146395::NZ_NFCJ01000069.1::G00025
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span63632-65762Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBK703_11855RefSeq proteinWP_082179202.1
Context group ID
GCF_002146395::NZ_NFCJ01000069.1::G00025Context members
BK703_RS11840BK703_RS11845
Partner locus tags
BK703_RS11840BK703_RS11845
Partner old locus tags
BK703_11850BK703_11855
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_082179202.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBK703_RS11845Primary locus identifier stored in the genes table.
Old locus tagBK703_11855Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NFCJ01000069.1Sequence record reported by the local genomic context database.
Genomic interval64 311-65 762 nt1 452 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span63 632-65 762 ntGCF_002146395::NZ_NFCJ01000069.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002146395::NZ_NFCJ01000069.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NFCJ01000069.1All displayed genes belong to this local TCS context.
Neighborhood span63 632-65 762 nt2 131 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
63 632 nt65 762 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BK703_RS11840GCF_002146395#BK703_RS11840
RROmpR
63 632-64 297 nt · Forward (+)
BK703_RS11845GCF_002146395#BK703_RS11845
HKClassicCurrent focus
64 311-65 762 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000293725#IGE_RS14670Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1594227
Simplified PFAM architecture for HKOC_1594227
PFAM domain coverage: 226 / 483 aa (46.8%)
1 aa483 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[174-226] | HisKA[252-316] | HATPase_c[366-473]
- Domain count: 3
- Matched identifier: HKOC_1594227
- Positioned domains: HAMP 174-226 ; HisKA 252-316 ; HATPase_c 366-473
Cluster members and taxonomy
Representative gene: GCF_000293725#IGE_RS14670
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 180 889 · GCF_002146395
AssemblyASM214639v1 · Contighaploid
Genome composition6 196 326 bp · 35,0% GCBacillus thuringiensis serovar silo
Signal transduction countsGenes 108 · HK 59 · RR 49CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key