1 Response_reg#1
8-110 aa · 103 aa · 52.8% of protein
Raw token
Response_reg:8:0.00000000161:110:105:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BK700_RS09390
Response regulator NarL family
Bacillus thuringiensis serovar toguchini · GCF_002146345
ClassRRTypeNarLLength195 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002146345#BK700_RS09390Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length195 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage147 / 195 aa (75.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa195 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
151-194 aa · 44 aa · 22.6% of protein
Raw token
HTH_LUXR:151:0.00000813:194:44:58- Raw architecture: Response_reg:8:0.00000000161:110:105:111#HTH_LUXR:151:0.00000813:194:44:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002146345::NZ_NFCG01000078.1::G00018
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span19555-20142Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBK700_09415RefSeq proteinWP_000152607.1
Context group ID
GCF_002146345::NZ_NFCG01000078.1::G00018Context members
BK700_RS09390
Partner locus tags
BK700_RS09390
Partner old locus tags
BK700_09415
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_000152607.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBK700_RS09390Primary locus identifier stored in the genes table.
Old locus tagBK700_09415Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NFCG01000078.1Sequence record reported by the local genomic context database.
Genomic interval19 555-20 142 nt588 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span19 555-20 142 ntGCF_002146345::NZ_NFCG01000078.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002146345::NZ_NFCG01000078.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NFCG01000078.1All displayed genes belong to this local TCS context.
Neighborhood span19 555-20 142 nt588 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
19 555 nt20 142 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BK700_RS09390GCF_002146345#BK700_RS09390
RRNarLCurrent focus
19 555-20 142 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000291215#IIE_RS30955Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2158084
Simplified PFAM architecture for RROC_2158084
PFAM domain coverage: 106 / 195 aa (54.4%)
1 aa195 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[7-112]
- Domain count: 1
- Matched identifier: RROC_2158084
- Positioned domains: Response_reg 7-112 ; Response_reg 7-112
Cluster members and taxonomy
Representative gene: GCF_000291215#IIE_RS30955
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 180 898 · GCF_002146345
AssemblyASM214634v1 · Contighaploid
Genome composition6 192 330 bp · 35,0% GCBacillus thuringiensis serovar toguchini
Signal transduction countsGenes 108 · HK 59 · RR 49CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key