1 Response_reg#1
5-114 aa · 110 aa · 46.4% of protein
Raw token
Response_reg:5:5.44e-40:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
S3E15_RS00540
Response regulator OmpR family
Bacillus mycoides · GCF_002118195
ClassRRTypeOmpRLength237 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002118195#S3E15_RS00540Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length237 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 237 aa (78.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa237 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-229 aa · 77 aa · 32.5% of protein
Raw token
Trans_reg_C:153:4.79e-32:229:77:77- Raw architecture: Response_reg:5:5.44e-40:114:111:111#Trans_reg_C:153:4.79e-32:229:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002118195::NZ_MRWU01000001.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span103122-104890Genomic interval covered by the local TCS group.
Identifiers
Old locus tagS3E15_00111RefSeq proteinWP_002017159.1
Context group ID
GCF_002118195::NZ_MRWU01000001.1::G00004Context members
S3E15_RS00540S3E15_RS00545
Partner locus tags
S3E15_RS00540S3E15_RS00545
Partner old locus tags
S3E15_00111S3E15_00112
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002017159.1Primary protein accession used for annex mappings.
UniProt accessionJ8HPZ7Primary UniProt accession resolved in the annex database.
UniProt IDJ8HPZ7_BACCEDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagS3E15_RS00540Primary locus identifier stored in the genes table.
Old locus tagS3E15_00111Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MRWU01000001.1Sequence record reported by the local genomic context database.
Genomic interval103 122-103 835 nt714 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span103 122-104 890 ntGCF_002118195::NZ_MRWU01000001.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002118195::NZ_MRWU01000001.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MRWU01000001.1All displayed genes belong to this local TCS context.
Neighborhood span103 122-104 890 nt1 769 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
103 122 nt104 890 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
S3E15_RS00540GCF_002118195#S3E15_RS00540
RROmpRCurrent focus
103 122-103 835 nt · Forward (+)
S3E15_RS00545GCF_002118195#S3E15_RS00545
HKClassic
103 832-104 890 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003925#BMYCO0001_RS14450Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0961334
Simplified PFAM architecture for RROC_0961334
PFAM domain coverage: 185 / 237 aa (78.1%)
1 aa237 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[154-229]
- Domain count: 2
- Matched identifier: RROC_0961334
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 154-229 ; Trans_reg_C 154-229
Cluster members and taxonomy
Representative gene: GCF_000003925#BMYCO0001_RS14450
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_002118195
AssemblyASM211819v1 · Contighaploid
Genome composition5 743 511 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 131 · HK 70 · RR 61CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key