1 HAMP#1
162-235 aa · 74 aa · 15.3% of protein
Raw token
HAMP:162:0.0000000000248:235:74:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BTJ48_RS12670
Histidine kinase, Classic
Bacillus mycoides · GCF_002118185
ClassHKTypeClassicLength484 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002118185#BTJ48_RS12670Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length484 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage249 / 484 aa (51.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa484 aa
Domain-by-domain annotation3 items
2 HisKA#2
246-313 aa · 68 aa · 14.0% of protein
Raw token
HisKA:246:0.000000000000102:313:68:643 HATPase_c#3
364-470 aa · 107 aa · 22.1% of protein
Raw token
HATPase_c:364:4.62e-29:470:107:109- Raw architecture: HAMP:162:0.0000000000248:235:74:69#HisKA:246:0.000000000000102:313:68:64#HATPase_c:364:4.62e-29:470:107:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002118185::NZ_MRWW01000004.1::G00046
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3721-5855Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBTJ48_04038RefSeq proteinWP_002128187.1
Context group ID
GCF_002118185::NZ_MRWW01000004.1::G00046Context members
BTJ48_RS12670BTJ48_RS12675
Partner locus tags
BTJ48_RS12670BTJ48_RS12675
Partner old locus tags
BTJ48_04038BTJ48_04039
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002128187.1Primary protein accession used for annex mappings.
UniProt accessionJ8EYV5Primary UniProt accession resolved in the annex database.
UniProt IDJ8EYV5_BACCEDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBTJ48_RS12670Primary locus identifier stored in the genes table.
Old locus tagBTJ48_04038Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MRWW01000004.1Sequence record reported by the local genomic context database.
Genomic interval3 721-5 175 nt1 455 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 721-5 855 ntGCF_002118185::NZ_MRWW01000004.1::G00046
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002118185::NZ_MRWW01000004.1::G00046Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MRWW01000004.1All displayed genes belong to this local TCS context.
Neighborhood span3 721-5 855 nt2 135 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 721 nt5 855 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BTJ48_RS12670GCF_002118185#BTJ48_RS12670
HKClassicCurrent focus
3 721-5 175 nt · Reverse (-)
BTJ48_RS12675GCF_002118185#BTJ48_RS12675
RROmpR
5 175-5 855 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003925#BMYCO0001_RS26570Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1583983
Simplified PFAM architecture for HKOC_1583983
PFAM domain coverage: 224 / 484 aa (46.3%)
1 aa484 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[184-234] | HisKA[247-312] | HATPase_c[364-470]
- Domain count: 3
- Matched identifier: HKOC_1583983
- Positioned domains: HAMP 184-234 ; HisKA 247-312 ; HATPase_c 364-470
Cluster members and taxonomy
Representative gene: GCF_000003925#BMYCO0001_RS26570
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_002118185
AssemblyASM211818v1 · Contighaploid
Genome composition5 747 467 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 136 · HK 73 · RR 63CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key