1 HAMP#1
319-386 aa · 68 aa · 10.9% of protein
Raw token
HAMP:319:0.0000000000000344:386:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BTJ48_RS10630
Histidine kinase, Classic
Bacillus mycoides · GCF_002118185
ClassHKTypeClassicLength625 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002118185#BTJ48_RS10630Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length625 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage244 / 625 aa (39.0%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa625 aa
Domain-by-domain annotation3 items
2 HisKA#2
406-470 aa · 65 aa · 10.4% of protein
Raw token
HisKA:406:0.0000000000000152:470:65:643 HATPase_c#3
514-624 aa · 111 aa · 17.8% of protein
Raw token
HATPase_c:514:1.19e-22:624:113:109- Raw architecture: HAMP:319:0.0000000000000344:386:68:69#HisKA:406:0.0000000000000152:470:65:64#HATPase_c:514:1.19e-22:624:113:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002118185::NZ_MRWW01000003.1::G00039
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span72003-74566Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBTJ48_03490RefSeq proteinWP_078213633.1
Context group ID
GCF_002118185::NZ_MRWW01000003.1::G00039Context members
BTJ48_RS10625BTJ48_RS10630
Partner locus tags
BTJ48_RS10625BTJ48_RS10630
Partner old locus tags
BTJ48_03489BTJ48_03490
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_078213633.1Primary protein accession used for annex mappings.
UniProt accessionA0AAP8GZ61Primary UniProt accession resolved in the annex database.
UniProt IDA0AAP8GZ61_BACMYDisplay identifier provided by UniProt.
GO / PubMed6 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBTJ48_RS10630Primary locus identifier stored in the genes table.
Old locus tagBTJ48_03490Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MRWW01000003.1Sequence record reported by the local genomic context database.
Genomic interval72 689-74 566 nt1 878 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span72 003-74 566 ntGCF_002118185::NZ_MRWW01000003.1::G00039
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002118185::NZ_MRWW01000003.1::G00039Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MRWW01000003.1All displayed genes belong to this local TCS context.
Neighborhood span72 003-74 566 nt2 564 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
72 003 nt74 566 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BTJ48_RS10625GCF_002118185#BTJ48_RS10625
RROmpR
72 003-72 692 nt · Forward (+)
BTJ48_RS10630GCF_002118185#BTJ48_RS10630
HKClassicCurrent focus
72 689-74 566 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002014715#BGP34_RS05210Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0959742
Simplified PFAM architecture for HKOC_0959742
PFAM domain coverage: 226 / 625 aa (36.2%)
1 aa625 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[337-386] | HisKA[406-470] | HATPase_c[514-624]
- Domain count: 3
- Matched identifier: HKOC_0959742
- Positioned domains: HAMP 337-386 ; HisKA 406-470 ; HATPase_c 514-624
Cluster members and taxonomy
Representative gene: GCF_002014715#BGP34_RS05210
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_002118185
AssemblyASM211818v1 · Contighaploid
Genome composition5 747 467 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 136 · HK 73 · RR 63CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key