1 Response_reg#1
4-116 aa · 113 aa · 53.1% of protein
Raw token
Response_reg:4:8.77e-35:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
S2E19_RS18805
Response regulator NarL family
Bacillus mycoides · GCF_002118175
ClassRRTypeNarLLength213 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002118175#S2E19_RS18805Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length213 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage168 / 213 aa (78.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa213 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
150-204 aa · 55 aa · 25.8% of protein
Raw token
HTH_LUXR:150:9.36e-25:204:55:58- Raw architecture: Response_reg:4:8.77e-35:116:113:111#HTH_LUXR:150:9.36e-25:204:55:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002118175::NZ_MRWV01000010.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span86852-89318Genomic interval covered by the local TCS group.
Identifiers
Old locus tagS2E19_00821RefSeq proteinWP_088038490.1
Context group ID
GCF_002118175::NZ_MRWV01000010.1::G00004Context members
S2E19_RS18805S2E19_RS18810
Partner locus tags
S2E19_RS18805S2E19_RS18810
Partner old locus tags
S2E19_00821S2E19_00822
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_088038490.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagS2E19_RS18805Primary locus identifier stored in the genes table.
Old locus tagS2E19_00821Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MRWV01000010.1Sequence record reported by the local genomic context database.
Genomic interval86 852-87 493 nt642 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span86 852-89 318 ntGCF_002118175::NZ_MRWV01000010.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002118175::NZ_MRWV01000010.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MRWV01000010.1All displayed genes belong to this local TCS context.
Neighborhood span86 852-89 318 nt2 467 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
86 852 nt89 318 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
S2E19_RS18805GCF_002118175#S2E19_RS18805
RRNarLCurrent focus
86 852-87 493 nt · Reverse (-)
S2E19_RS18810GCF_002118175#S2E19_RS18810
HKClassic
87 495-89 318 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002118175#S2E19_RS18805The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1966182
Simplified PFAM architecture for RROC_1966182
PFAM domain coverage: 169 / 213 aa (79.3%)
1 aa213 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[4-116] | GerE[149-204]
- Domain count: 2
- Matched identifier: RROC_1966182
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; GerE 149-204 ; GerE 149-204
Cluster members and taxonomy
Representative gene: GCF_002118175#S2E19_RS18805
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_002118175
AssemblyASM211817v1 · Contighaploid
Genome composition5 948 174 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 129 · HK 69 · RR 60CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key