1 Response_reg#1
6-113 aa · 108 aa · 48.4% of protein
Raw token
Response_reg:6:1.26e-27:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
S2E19_RS04215
Response regulator OmpR family
Bacillus mycoides · GCF_002118175
ClassRRTypeOmpRLength223 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002118175#S2E19_RS04215Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage180 / 223 aa (80.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
146-217 aa · 72 aa · 32.3% of protein
Raw token
Trans_reg_C:146:9.32e-16:217:75:77- Raw architecture: Response_reg:6:1.26e-27:113:111:111#Trans_reg_C:146:9.32e-16:217:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002118175::NZ_MRWV01000002.1::G00024
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span89171-89842Genomic interval covered by the local TCS group.
Identifiers
Old locus tagS2E19_02142RefSeq proteinWP_003190126.1
Context group ID
GCF_002118175::NZ_MRWV01000002.1::G00024Context members
S2E19_RS04215
Partner locus tags
S2E19_RS04215
Partner old locus tags
S2E19_02142
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003190126.1Primary protein accession used for annex mappings.
UniProt accessionA0AAP7WE60Primary UniProt accession resolved in the annex database.
UniProt IDA0AAP7WE60_BACMYDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagS2E19_RS04215Primary locus identifier stored in the genes table.
Old locus tagS2E19_02142Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MRWV01000002.1Sequence record reported by the local genomic context database.
Genomic interval89 171-89 842 nt672 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span89 171-89 842 ntGCF_002118175::NZ_MRWV01000002.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002118175::NZ_MRWV01000002.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MRWV01000002.1All displayed genes belong to this local TCS context.
Neighborhood span89 171-89 842 nt672 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
89 171 nt89 842 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
S2E19_RS04215GCF_002118175#S2E19_RS04215
RROmpRCurrent focus
89 171-89 842 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003925#BMYCO0001_RS13610Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1586794
Simplified PFAM architecture for RROC_1586794
PFAM domain coverage: 179 / 223 aa (80.3%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-112] | Trans_reg_C[146-217]
- Domain count: 2
- Matched identifier: RROC_1586794
- Positioned domains: Response_reg 6-112 ; Response_reg 6-112 ; Trans_reg_C 146-217 ; Trans_reg_C 146-217
Cluster members and taxonomy
Representative gene: GCF_000003925#BMYCO0001_RS13610
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 50 over 52 total members. Page 1 / 2.
GCF_000003925#BMYCO0001_RS13610 (representative) | ||||
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_002118175
AssemblyASM211817v1 · Contighaploid
Genome composition5 948 174 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 129 · HK 69 · RR 60CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key