1 HAMP#1
208-277 aa · 70 aa · 11.8% of protein
Raw token
HAMP:208:0.00000000000000178:277:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LMG18897_RS03310
Histidine kinase, Classic
Bifidobacterium adolescentis · GCF_002108165
ClassHKTypeClassicLength593 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002108165#LMG18897_RS03310Stable P2CS identifier used across views.
GenomeGCF_002108165Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length593 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage288 / 593 aa (48.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation3 items
2 HisKA#2
288-357 aa · 70 aa · 11.8% of protein
Raw token
HisKA:288:2.44e-16:357:70:643 HATPase_c#3
421-568 aa · 148 aa · 25.0% of protein
Raw token
HATPase_c:421:5.87e-21:568:148:109- Raw architecture: HAMP:208:0.00000000000000178:277:70:69#HisKA:288:2.44e-16:357:70:64#HATPase_c:421:5.87e-21:568:148:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002108165::NZ_LNKM01000008.1::G00011
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span56374-58961Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLMG18897_0652RefSeq proteinWP_080863565.1
Context group ID
GCF_002108165::NZ_LNKM01000008.1::G00011Context members
LMG18897_RS03305LMG18897_RS03310
Partner locus tags
LMG18897_RS03305LMG18897_RS03310
Partner old locus tags
LMG18897_0651LMG18897_0652
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_080863565.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLMG18897_RS03310Primary locus identifier stored in the genes table.
Old locus tagLMG18897_0652Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LNKM01000008.1Sequence record reported by the local genomic context database.
Genomic interval57 180-58 961 nt1 782 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span56 374-58 961 ntGCF_002108165::NZ_LNKM01000008.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002108165::NZ_LNKM01000008.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LNKM01000008.1All displayed genes belong to this local TCS context.
Neighborhood span56 374-58 961 nt2 588 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
56 374 nt58 961 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LMG18897_RS03305GCF_002108165#LMG18897_RS03305
RROmpR
56 374-57 105 nt · Forward (+)
LMG18897_RS03310GCF_002108165#LMG18897_RS03310
HKClassicCurrent focus
57 180-58 961 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002075965#B5789_RS06970Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1093944
Simplified PFAM architecture for HKOC_1093944
PFAM domain coverage: 269 / 593 aa (45.4%)
1 aa593 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[225-277] | HisKA[289-357] | HATPase_c[421-567]
- Domain count: 3
- Matched identifier: HKOC_1093944
- Positioned domains: HAMP 225-277 ; HisKA 289-357 ; HATPase_c 421-567
Cluster members and taxonomy
Representative gene: GCF_002075965#B5789_RS06970
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 680 · GCF_002108165
AssemblyBadoLMG188971 · Contighaploid
Genome composition2 146 787 bp · 60,0% GCBifidobacterium adolescentis
Signal transduction countsGenes 26 · HK 11 · RR 14CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key