1 HisKA#1
192-257 aa · 66 aa · 14.1% of protein
Raw token
HisKA:192:0.00000000000219:257:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AD0028_RS01605
Histidine kinase, Classic
Bifidobacterium adolescentis · GCF_002108045
ClassHKTypeClassicLength469 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002108045#AD0028_RS01605Stable P2CS identifier used across views.
GenomeGCF_002108045Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length469 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage176 / 469 aa (37.5%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
323-432 aa · 110 aa · 23.5% of protein
Raw token
HATPase_c:323:7.6e-29:432:110:109- Raw architecture: HisKA:192:0.00000000000219:257:66:64#HATPase_c:323:7.6e-29:432:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002108045::NZ_LNKF01000002.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span79280-81393Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAD0028_0303RefSeq proteinWP_039774764.1
Context group ID
GCF_002108045::NZ_LNKF01000002.1::G00004Context members
AD0028_RS01605AD0028_RS01610
Partner locus tags
AD0028_RS01605AD0028_RS01610
Partner old locus tags
AD0028_0303AD0028_0304
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_039774764.1Primary protein accession used for annex mappings.
UniProt accessionA0A0B5BMI6Primary UniProt accession resolved in the annex database.
UniProt IDA0A0B5BMI6_BIFADDisplay identifier provided by UniProt.
GO / PubMed5 / 2Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAD0028_RS01605Primary locus identifier stored in the genes table.
Old locus tagAD0028_0303Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LNKF01000002.1Sequence record reported by the local genomic context database.
Genomic interval79 280-80 689 nt1 410 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span79 280-81 393 ntGCF_002108045::NZ_LNKF01000002.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002108045::NZ_LNKF01000002.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LNKF01000002.1All displayed genes belong to this local TCS context.
Neighborhood span79 280-81 393 nt2 114 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
79 280 nt81 393 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AD0028_RS01605GCF_002108045#AD0028_RS01605
HKClassicCurrent focus
79 280-80 689 nt · Forward (+)
AD0028_RS01610GCF_002108045#AD0028_RS01610
RROmpR
80 689-81 393 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000817995#BBMN23_RS01495Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1727734
Simplified PFAM architecture for HKOC_1727734
PFAM domain coverage: 177 / 469 aa (37.7%)
1 aa469 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[192-257] | HATPase_c[324-434]
- Domain count: 2
- Matched identifier: HKOC_1727734
- Positioned domains: HisKA 192-257 ; HATPase_c 324-434
Cluster members and taxonomy
Representative gene: GCF_000817995#BBMN23_RS01495
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 680 · GCF_002108045
AssemblyBadoAD28v1 · Contighaploid
Genome composition2 379 716 bp · 60,0% GCBifidobacterium adolescentis
Signal transduction countsGenes 25 · HK 11 · RR 13CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key