1 HisKA#1
124-190 aa · 67 aa · 19.4% of protein
Raw token
HisKA:124:0.0000000000000164:190:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
A6J96_RS01920
Histidine kinase, Classic
Clostridioides difficile · GCF_002082945
ClassHKTypeClassicLength345 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002082945#A6J96_RS01920Stable P2CS identifier used across views.
GenomeGCF_002082945Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length345 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage153 / 345 aa (44.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa345 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
243-328 aa · 86 aa · 24.9% of protein
Raw token
HATPase_c:243:0.0000000641:328:90:109- Raw architecture: HisKA:124:0.0000000000000164:190:67:64#HATPase_c:243:0.0000000641:328:90:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002082945::NZ_NBTS02000002.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span397931-400205Genomic interval covered by the local TCS group.
Identifiers
Old locus tagA6J96_001920RefSeq proteinWP_021361920.1
Context group ID
GCF_002082945::NZ_NBTS02000002.1::G00007Context members
A6J96_RS01920A6J96_RS01925
Partner locus tags
A6J96_RS01920A6J96_RS01925
Partner old locus tags
A6J96_001920A6J96_001925
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_021361920.1Primary protein accession used for annex mappings.
UniProt accessionA0A381ICQ1Primary UniProt accession resolved in the annex database.
UniProt IDA0A381ICQ1_CLODIDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagA6J96_RS01920Primary locus identifier stored in the genes table.
Old locus tagA6J96_001920Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NBTS02000002.1Sequence record reported by the local genomic context database.
Genomic interval397 931-399 520 nt1 590 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span397 931-400 205 ntGCF_002082945::NZ_NBTS02000002.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002082945::NZ_NBTS02000002.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NBTS02000002.1All displayed genes belong to this local TCS context.
Neighborhood span397 931-400 205 nt2 275 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
397 931 nt400 205 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
A6J96_RS01920GCF_002082945#A6J96_RS01920
HKClassicCurrent focus
397 931-399 520 nt · Reverse (-)
A6J96_RS01925GCF_002082945#A6J96_RS01925
RROmpR
399 489-400 205 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000009205#CD630_RS12495Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1359670
Simplified PFAM architecture for HKOC_1359670
PFAM domain coverage: 191 / 529 aa (36.1%)
1 aa529 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[254-294] | HisKA[309-374] | HATPase_c[426-509]
- Domain count: 3
- Matched identifier: HKOC_1359670
- Positioned domains: HAMP 254-294 ; HisKA 309-374 ; HATPase_c 426-509
Cluster members and taxonomy
Representative gene: GCF_000009205#CD630_RS12495
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002082945
AssemblyASM208294v2 · Contighaploid
Genome composition4 343 228 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 103 · HK 49 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key