1 HisKA#1
218-278 aa · 61 aa · 14.0% of protein
Raw token
HisKA:218:0.0000000000671:278:61:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CDIF630erm_RS13885
Histidine kinase, Classic
Clostridioides difficile · GCF_002080065
ClassHKTypeClassicLength436 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002080065#CDIF630erm_RS13885Stable P2CS identifier used across views.
GenomeGCF_002080065Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length436 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage161 / 436 aa (36.9%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa436 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
334-433 aa · 100 aa · 22.9% of protein
Raw token
HATPase_c:334:8.12e-25:433:100:109- Raw architecture: HisKA:218:0.0000000000671:278:61:64#HATPase_c:334:8.12e-25:433:100:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002080065::NZ_CP016318.1::G00043
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2886343-2888354Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCDIF630erm_02787RefSeq proteinWP_009903237.1
Context group ID
GCF_002080065::NZ_CP016318.1::G00043Context members
CDIF630erm_RS13885CDIF630erm_RS13890
Partner locus tags
CDIF630erm_RS13885CDIF630erm_RS13890
Partner old locus tags
CDIF630erm_02787CDIF630erm_02788
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_009903237.1Primary protein accession used for annex mappings.
UniProt accessionA0AB74Q936Primary UniProt accession resolved in the annex database.
UniProt IDA0AB74Q936_CLODIDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCDIF630erm_RS13885Primary locus identifier stored in the genes table.
Old locus tagCDIF630erm_02787Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP016318.1Sequence record reported by the local genomic context database.
Genomic interval2 886 343-2 887 653 nt1 311 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 886 343-2 888 354 ntGCF_002080065::NZ_CP016318.1::G00043
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002080065::NZ_CP016318.1::G00043Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP016318.1All displayed genes belong to this local TCS context.
Neighborhood span2 886 343-2 888 354 nt2 012 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 886 343 nt2 888 354 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CDIF630erm_RS13885GCF_002080065#CDIF630erm_RS13885
HKClassicCurrent focus
2 886 343-2 887 653 nt · Reverse (-)
CDIF630erm_RS13890GCF_002080065#CDIF630erm_RS13890
RROmpR
2 887 647-2 888 354 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000449985#QIK_RS13790Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2032570
Simplified PFAM architecture for HKOC_2032570
PFAM domain coverage: 166 / 444 aa (37.4%)
1 aa444 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[225-286] | HATPase_c[338-441]
- Domain count: 2
- Matched identifier: HKOC_2032570
- Positioned domains: HisKA 225-286 ; HATPase_c 338-441
Cluster members and taxonomy
Representative gene: GCF_000449985#QIK_RS13790
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002080065
AssemblyASM208006v1 · Complete Genomehaploid
Genome composition4 300 929 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 103 · HK 49 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key