1 Response_reg#1
3-112 aa · 110 aa · 50.2% of protein
Raw token
Response_reg:3:7.91e-24:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CDIF630erm_RS02425
Response regulator OmpR family
Clostridioides difficile · GCF_002080065
ClassRRTypeOmpRLength219 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002080065#CDIF630erm_RS02425Stable P2CS identifier used across views.
GenomeGCF_002080065Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length219 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 219 aa (84.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
145-219 aa · 75 aa · 34.2% of protein
Raw token
Trans_reg_C:145:9.26e-21:219:76:77- Raw architecture: Response_reg:3:7.91e-24:112:111:111#Trans_reg_C:145:9.26e-21:219:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002080065::NZ_CP016318.1::G00004
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span438383-439042Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCDIF630erm_00489RefSeq proteinWP_011860750.1
Context group ID
GCF_002080065::NZ_CP016318.1::G00004Context members
CDIF630erm_RS02425
Partner locus tags
CDIF630erm_RS02425
Partner old locus tags
CDIF630erm_00489
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_011860750.1Primary protein accession used for annex mappings.
UniProt accessionA0A6N4TKZ4Primary UniProt accession resolved in the annex database.
UniProt IDA0A6N4TKZ4_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCDIF630erm_RS02425Primary locus identifier stored in the genes table.
Old locus tagCDIF630erm_00489Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP016318.1Sequence record reported by the local genomic context database.
Genomic interval438 383-439 042 nt660 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span438 383-439 042 ntGCF_002080065::NZ_CP016318.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002080065::NZ_CP016318.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP016318.1All displayed genes belong to this local TCS context.
Neighborhood span438 383-439 042 nt660 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
438 383 nt439 042 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CDIF630erm_RS02425GCF_002080065#CDIF630erm_RS02425
RROmpRCurrent focus
438 383-439 042 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000009205#CD630_RS02355Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1767221
Simplified PFAM architecture for RROC_1767221
PFAM domain coverage: 184 / 219 aa (84.0%)
1 aa219 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-111] | Trans_reg_C[145-219]
- Domain count: 2
- Matched identifier: RROC_1767221
- Positioned domains: Response_reg 3-111 ; Response_reg 3-111 ; Trans_reg_C 145-219 ; Trans_reg_C 145-219
Cluster members and taxonomy
Representative gene: GCF_000009205#CD630_RS02355
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002080065
AssemblyASM208006v1 · Complete Genomehaploid
Genome composition4 300 929 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 103 · HK 49 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key