1 Response_reg#1
29-129 aa · 101 aa · 43.2% of protein
Raw token
Response_reg:29:3.59e-18:129:101:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
B5785_RS12850
Response regulator NarL family
Bifidobacterium longum subsp. infantis · GCF_002076025
ClassRRTypeNarLLength234 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002076025#B5785_RS12850Stable P2CS identifier used across views.
GenomeGCF_002076025Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage155 / 234 aa (66.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa234 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
174-227 aa · 54 aa · 23.1% of protein
Raw token
HTH_LUXR:174:0.00000000000000133:227:54:58- Raw architecture: Response_reg:29:3.59e-18:129:101:111#HTH_LUXR:174:0.00000000000000133:227:54:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002076025::NZ_NAQJ01000017.1::G00002
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span34088-34792Genomic interval covered by the local TCS group.
Identifiers
Old locus tagB5785_1871RefSeq proteinWP_060621199.1
Context group ID
GCF_002076025::NZ_NAQJ01000017.1::G00002Context members
B5785_RS12850
Partner locus tags
B5785_RS12850
Partner old locus tags
B5785_1871
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_060621199.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagB5785_RS12850Primary locus identifier stored in the genes table.
Old locus tagB5785_1871Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NAQJ01000017.1Sequence record reported by the local genomic context database.
Genomic interval34 088-34 792 nt705 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span34 088-34 792 ntGCF_002076025::NZ_NAQJ01000017.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002076025::NZ_NAQJ01000017.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NAQJ01000017.1All displayed genes belong to this local TCS context.
Neighborhood span34 088-34 792 nt705 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
34 088 nt34 792 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
B5785_RS12850GCF_002076025#B5785_RS12850
RRNarLCurrent focus
34 088-34 792 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002076025#B5785_RS12850The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1053024
Simplified PFAM architecture for RROC_1053024
PFAM domain coverage: 161 / 234 aa (68.8%)
1 aa234 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[28-133] | GerE[173-227]
- Domain count: 2
- Matched identifier: RROC_1053024
- Positioned domains: Response_reg 28-133 ; Response_reg 28-133 ; GerE 173-227 ; GerE 173-227
Cluster members and taxonomy
Representative gene: GCF_002076025#B5785_RS12850
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 682 · GCF_002076025
AssemblyBbif1888B · Contighaploid
Genome composition2 579 732 bp · 59,5% GCBifidobacterium longum subsp. infantis
Signal transduction countsGenes 40 · HK 13 · RR 24CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key