1 Response_reg#1
3-114 aa · 112 aa · 51.9% of protein
Raw token
Response_reg:3:2.56e-16:114:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
B5785_RS10550
Response regulator NarL family
Bifidobacterium longum subsp. infantis · GCF_002076025
ClassRRTypeNarLLength216 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002076025#B5785_RS10550Stable P2CS identifier used across views.
GenomeGCF_002076025Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length216 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage166 / 216 aa (76.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa216 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
154-207 aa · 54 aa · 25.0% of protein
Raw token
HTH_LUXR:154:7.27e-18:207:54:58- Raw architecture: Response_reg:3:2.56e-16:114:113:111#HTH_LUXR:154:7.27e-18:207:54:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002076025::NZ_NAQJ01000017.1::G00009
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span199123-199773Genomic interval covered by the local TCS group.
Identifiers
Old locus tagB5785_2010RefSeq proteinWP_158082803.1
Context group ID
GCF_002076025::NZ_NAQJ01000017.1::G00009Context members
B5785_RS10550
Partner locus tags
B5785_RS10550
Partner old locus tags
B5785_2010
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_158082803.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagB5785_RS10550Primary locus identifier stored in the genes table.
Old locus tagB5785_2010Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NAQJ01000017.1Sequence record reported by the local genomic context database.
Genomic interval199 123-199 773 nt651 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span199 123-199 773 ntGCF_002076025::NZ_NAQJ01000017.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002076025::NZ_NAQJ01000017.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NAQJ01000017.1All displayed genes belong to this local TCS context.
Neighborhood span199 123-199 773 nt651 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
199 123 nt199 773 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
B5785_RS10550GCF_002076025#B5785_RS10550
RRNarLCurrent focus
199 123-199 773 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001281305#RY67_RS10575Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1881879
Simplified PFAM architecture for RROC_1881879
PFAM domain coverage: 164 / 216 aa (75.9%)
1 aa216 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[3-113] | GerE[153-205]
- Domain count: 2
- Matched identifier: RROC_1881879
- Positioned domains: Response_reg 3-113 ; Response_reg 3-113 ; GerE 153-205 ; GerE 153-205
Cluster members and taxonomy
Representative gene: GCF_001281305#RY67_RS10575
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 682 · GCF_002076025
AssemblyBbif1888B · Contighaploid
Genome composition2 579 732 bp · 59,5% GCBifidobacterium longum subsp. infantis
Signal transduction countsGenes 40 · HK 13 · RR 24CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key