1 HisKA_3#1
215-278 aa · 64 aa · 14.2% of protein
Raw token
HisKA_3:215:0.00000000000000598:278:64:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
B5785_RS09855
Histidine kinase, Classic
Bifidobacterium longum subsp. infantis · GCF_002076025
ClassHKTypeClassicLength450 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002076025#B5785_RS09855Stable P2CS identifier used across views.
GenomeGCF_002076025Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length450 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 450 aa (40.7%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa450 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
325-443 aa · 119 aa · 26.4% of protein
Raw token
HATPase_c:325:0.000000036:443:120:109- Raw architecture: HisKA_3:215:0.00000000000000598:278:64:68#HATPase_c:325:0.000000036:443:120:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002076025::NZ_NAQJ01000017.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span42412-44417Genomic interval covered by the local TCS group.
Identifiers
Old locus tagB5785_1881RefSeq proteinWP_060621203.1
Context group ID
GCF_002076025::NZ_NAQJ01000017.1::G00003Context members
B5785_RS09855B5785_RS09860
Partner locus tags
B5785_RS09855B5785_RS09860
Partner old locus tags
B5785_1881B5785_1882
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_060621203.1Primary protein accession used for annex mappings.
UniProt accessionA0A0M4LW10Primary UniProt accession resolved in the annex database.
UniProt IDA0A0M4LW10_BIFLIDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagB5785_RS09855Primary locus identifier stored in the genes table.
Old locus tagB5785_1881Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NAQJ01000017.1Sequence record reported by the local genomic context database.
Genomic interval42 412-43 764 nt1 353 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span42 412-44 417 ntGCF_002076025::NZ_NAQJ01000017.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002076025::NZ_NAQJ01000017.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NAQJ01000017.1All displayed genes belong to this local TCS context.
Neighborhood span42 412-44 417 nt2 006 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
42 412 nt44 417 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
B5785_RS09855GCF_002076025#B5785_RS09855
HKClassicCurrent focus
42 412-43 764 nt · Forward (+)
B5785_RS09860GCF_002076025#B5785_RS09860
RRNarL
43 764-44 417 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001281305#RY67_RS09905Use this link to inspect the representative gene detail.
PFAM architectureHisKA_31 domain in the representative PFAM annotation.
PFAM architecture for HKOC_1963269
Simplified PFAM architecture for HKOC_1963269
PFAM domain coverage: 66 / 450 aa (14.7%)
1 aa450 aa
HisKA_3
- Simplified architecture: HisKA_3
- Raw architecture: HisKA_3[215-280]
- Domain count: 1
- Matched identifier: HKOC_1963269
- Positioned domains: HisKA_3 215-280
Cluster members and taxonomy
Representative gene: GCF_001281305#RY67_RS09905
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 682 · GCF_002076025
AssemblyBbif1888B · Contighaploid
Genome composition2 579 732 bp · 59,5% GCBifidobacterium longum subsp. infantis
Signal transduction countsGenes 40 · HK 13 · RR 24CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key