Gene detail

B5791_RS03015

Histidine kinase, Classic

Bifidobacterium pseudocatenulatum · GCF_002075945

Open genome Open selected cluster RefSeq

ClassHKTypeClassicLength449 aaTM0ValidatedNoCompleteYesContextpaired

Gene IDGCF_002075945#B5791_RS03015Stable P2CS identifier used across views.

GenomeGCF_002075945Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium

Selected clusterHKOC_1975092Run 6 · 29 sequences · id 100% · cov 80%

External referencesWP_055063610.1 · MIST4 B5791_RS03015RefSeq · MIST4

Domain signature

Compact overview inferred from the domain field

HisKA_3HATPase_c

Protein length449 aaLength used to scale native and Biotite-like views.

Annotated domains22 with usable coordinates.

Domain coverage175 / 449 aa (39.0%)Merged over positioned domains only.

Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.

Signal peptideUnavailableNo TMPRED prediction file matched this gene.

Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.

Complete domain annotations

Domain view

Native Biotite-like

Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.

1 aa449 aa

Domain-by-domain annotation2 items

1 HisKA_3#1

216-280 aa · 65 aa · 14.5% of protein

Raw tokenHisKA_3:216:0.00000000000000332:280:65:68

2 HATPase_c#2

326-435 aa · 110 aa · 24.5% of protein

Raw tokenHATPase_c:326:0.0000000378:435:112:109

Raw architecture: HisKA_3:216:0.00000000000000332:280:65:68#HATPase_c:326:0.0000000378:435:112:109
Domain description: 1 HisKA_3,1 HATPase_c
TM description: N/A
TMPRED source: No TMPRED file loaded
TMPRED segments: N/A
Complete: Yes

Context mapping

Resolved via p2cs_tcs_context.db when a locus tag match exists

Context labelpairedGCF_002075945::NZ_NAQD01000002.1::G00007

Group size22 locus tags listed below.

HK / RR1 / 1Counts resolved for the local TCS neighborhood.

Context span540708-542716Genomic interval covered by the local TCS group.

Identifiers

Old locus tagB5791_0586RefSeq proteinWP_055063610.1

Context group IDGCF_002075945::NZ_NAQD01000002.1::G00007

Context members

B5791_RS03010B5791_RS03015

Partner locus tags

B5791_RS03010B5791_RS03015

Partner old locus tags

B5791_0585B5791_0586

Partner protein IDs

WP_033524130.1 WP_055063610.1

External references

Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table

No UniProt / GO / PubMed mapping was found for WP_055063610.1.

Genomic coordinates

Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table

Current locus tagB5791_RS03015Primary locus identifier stored in the genes table.

Old locus tagB5791_0586Legacy locus tag recovered from the local context mapping.

Contig / repliconNZ_NAQD01000002.1Sequence record reported by the local genomic context database.

Genomic interval541 367-542 716 nt1 350 nt · Reverse (-)

StrandReverse (-)Strand sign follows the local context database convention.

Local TCS group span540 708-542 716 ntGCF_002075945::NZ_NAQD01000002.1::G00007

Quick actions

Open genome Search genes in genome

Local neighborhood

Graphical neighborhood resolved from the local TCS context group on the current contig

GCF_002075945::NZ_NAQD01000002.1::G00007

Graphic view

Compact Biotite-like

Zoom

Full window Focus gene

Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.

Context labelpairedNeighborhood members are ordered by genomic coordinates.

Contig / repliconNZ_NAQD01000002.1All displayed genes belong to this local TCS context.

Neighborhood span540 708-542 716 nt2 009 nt

Members21 current focus gene

Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.

540 708 nt542 716 nt

+-B5791_RS03010 B5791_RS03015

Neighborhood gene cards

2 genes in the current local neighborhood.

B5791_RS03010GCF_002075945#B5791_RS03010

RRNarL

540 708-541 367 nt · Reverse (-)

Old locus B5791_0585RefSeq WP_033524130.1

Open gene

B5791_RS03015GCF_002075945#B5791_RS03015

HKClassicCurrent focus

541 367-542 716 nt · Reverse (-)

Old locus B5791_0586RefSeq WP_055063610.1

Open current gene

Clusters

CD-HIT memberships and selected cluster details for the current gene class

Available memberships1 cluster

HKOC_1975092HK

Run 629 sequencesid 100%cov 80%

PFAM HisKA_3

Representative GCF_001405035#ARA38_RS06575

Selected clusterHKOC_1975092Run 6 · HK · 29 sequences

Representative sequenceGCF_001405035#ARA38_RS06575Use this link to inspect the representative gene detail.

PFAM architectureHisKA_31 domain in the representative PFAM annotation.

Open in cluster search Open representative gene

PFAM architecture for HKOC_1975092

Simplified PFAM architecture for HKOC_1975092

PFAM domain coverage: 66 / 449 aa (14.7%)

1 aa449 aa

HisKA_3

Simplified architecture: HisKA_3
Raw architecture: HisKA_3[216-281]
Domain count: 1
Matched identifier: HKOC_1975092
Positioned domains: HisKA_3 216-281

Cluster members and taxonomy

Representative gene: GCF_001405035#ARA38_RS06575

Sankey plot built from the taxonomy of all members in the selected cluster.

Genome taxonomy

Unknown

Taxonomy recordUnknownTaxon ID 28 026 · GCF_002075945

AssemblyBbif1896B · Contighaploid

Genome composition2 197 471 bp · 56,0% GCBifidobacterium pseudocatenulatum

Signal transduction countsGenes 26 · HK 10 · RR 14CheA 0 · PP 2

Ranked taxonomy7 ranked levels available

SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium

Lineage path7 lineage nodes

1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium

Open genome Search genes in genome Search HK genes NCBI assembly files

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