1 Response_reg#1
36-113 aa · 78 aa · 30.5% of protein
Raw token
Response_reg:36:0.0000000000000112:113:78:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
B5780_RS12650
Response regulator, unclassified
Bifidobacterium longum · GCF_002075935
ClassRRTypeunclassifiedLength256 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002075935#B5780_RS12650Stable P2CS identifier used across views.
GenomeGCF_002075935Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length256 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage78 / 256 aa (30.5%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa256 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:36:0.0000000000000112:113:78:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002075935::NZ_NAQC01000004.1::G00008
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span397470-398240Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_002075935::NZ_NAQC01000004.1::G00008Context members
B5780_RS12650
Partner locus tags
B5780_RS12650
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_080784918.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagB5780_RS12650Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_NAQC01000004.1Sequence record reported by the local genomic context database.
Genomic interval397 470-398 240 nt771 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span397 470-398 240 ntGCF_002075935::NZ_NAQC01000004.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002075935::NZ_NAQC01000004.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NAQC01000004.1All displayed genes belong to this local TCS context.
Neighborhood span397 470-398 240 nt771 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
397 470 nt398 240 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
B5780_RS12650GCF_002075935#B5780_RS12650
RRunclassifiedCurrent focus
397 470-398 240 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002075935#B5780_RS12650The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_0674240
Simplified PFAM architecture for RROC_0674240
PFAM domain coverage: 82 / 256 aa (32.0%)
1 aa256 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[36-117]
- Domain count: 1
- Matched identifier: RROC_0674240
- Positioned domains: Response_reg 36-117 ; Response_reg 36-117
Cluster members and taxonomy
Representative gene: GCF_002075935#B5780_RS12650
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_002075935
AssemblyBbif1897B · Contighaploid
Genome composition2 453 605 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 24 · HK 11 · RR 13CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key