1 Response_reg#1
8-109 aa · 102 aa · 43.0% of protein
Raw token
Response_reg:8:1.08e-18:109:105:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
B5780_RS07590
Response regulator LytTR family
Bifidobacterium longum · GCF_002075935
ClassRRTypeLytTRLength237 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002075935#B5780_RS07590Stable P2CS identifier used across views.
GenomeGCF_002075935Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length237 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage194 / 237 aa (81.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa237 aa
Domain-by-domain annotation2 items
2 LytTR#2
139-230 aa · 92 aa · 38.8% of protein
Raw token
LytTR:139:1.14e-18:230:97:98- Raw architecture: Response_reg:8:1.08e-18:109:105:111#LytTR:139:1.14e-18:230:97:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002075935::NZ_NAQC01000013.1::G00001
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span49222-49935Genomic interval covered by the local TCS group.
Identifiers
Old locus tagB5780_1466RefSeq proteinWP_080785698.1
Context group ID
GCF_002075935::NZ_NAQC01000013.1::G00001Context members
B5780_RS07590
Partner locus tags
B5780_RS07590
Partner old locus tags
B5780_1466
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_080785698.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagB5780_RS07590Primary locus identifier stored in the genes table.
Old locus tagB5780_1466Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NAQC01000013.1Sequence record reported by the local genomic context database.
Genomic interval49 222-49 935 nt714 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span49 222-49 935 ntGCF_002075935::NZ_NAQC01000013.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002075935::NZ_NAQC01000013.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NAQC01000013.1All displayed genes belong to this local TCS context.
Neighborhood span49 222-49 935 nt714 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
49 222 nt49 935 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
B5780_RS07590GCF_002075935#B5780_RS07590
RRLytTRCurrent focus
49 222-49 935 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002075935#B5780_RS07590The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0966305
Simplified PFAM architecture for RROC_0966305
PFAM domain coverage: 195 / 237 aa (82.3%)
1 aa237 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[7-110] | LytTR[140-230]
- Domain count: 2
- Matched identifier: RROC_0966305
- Positioned domains: Response_reg 7-110 ; Response_reg 7-110 ; LytTR 140-230 ; LytTR 140-230
Cluster members and taxonomy
Representative gene: GCF_002075935#B5780_RS07590
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_002075935
AssemblyBbif1897B · Contighaploid
Genome composition2 453 605 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 24 · HK 11 · RR 13CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key