1 HAMP#1
57-127 aa · 71 aa · 19.9% of protein
Raw token
HAMP:57:1.09e-18:127:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
B5780_RS03740
Histidine kinase, Classic
Bifidobacterium longum · GCF_002075935
ClassHKTypeClassicLength357 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002075935#B5780_RS03740Stable P2CS identifier used across views.
GenomeGCF_002075935Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length357 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage247 / 357 aa (69.2%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa357 aa
Domain-by-domain annotation3 items
2 HisKA#2
131-195 aa · 65 aa · 18.2% of protein
Raw token
HisKA:131:6e-16:195:65:643 HATPase_c#3
240-350 aa · 111 aa · 31.1% of protein
Raw token
HATPase_c:240:1.97e-22:350:112:109- Raw architecture: HAMP:57:1.09e-18:127:71:69#HisKA:131:6e-16:195:65:64#HATPase_c:240:1.97e-22:350:112:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002075935::NZ_NAQC01000005.1::G00012
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span59509-61304Genomic interval covered by the local TCS group.
Identifiers
Old locus tagB5780_0733RefSeq proteinWP_179133445.1
Context group ID
GCF_002075935::NZ_NAQC01000005.1::G00012Context members
B5780_RS03735B5780_RS03740
Partner locus tags
B5780_RS03735B5780_RS03740
Partner old locus tags
B5780_0732B5780_0733
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_179133445.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagB5780_RS03740Primary locus identifier stored in the genes table.
Old locus tagB5780_0733Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NAQC01000005.1Sequence record reported by the local genomic context database.
Genomic interval60 231-61 304 nt1 074 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span59 509-61 304 ntGCF_002075935::NZ_NAQC01000005.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002075935::NZ_NAQC01000005.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NAQC01000005.1All displayed genes belong to this local TCS context.
Neighborhood span59 509-61 304 nt1 796 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
59 509 nt61 304 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
B5780_RS03735GCF_002075935#B5780_RS03735
RROmpR
59 509-60 231 nt · Forward (+)
B5780_RS03740GCF_002075935#B5780_RS03740
HKClassicCurrent focus
60 231-61 304 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002075935#B5780_RS03740The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2765992
Simplified PFAM architecture for HKOC_2765992
PFAM domain coverage: 231 / 357 aa (64.7%)
1 aa357 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[73-126] | HisKA[131-195] | HATPase_c[240-351]
- Domain count: 3
- Matched identifier: HKOC_2765992
- Positioned domains: HAMP 73-126 ; HisKA 131-195 ; HATPase_c 240-351
Cluster members and taxonomy
Representative gene: GCF_002075935#B5780_RS03740
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 6 over 6 total members. Page 1 / 1.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_002075935
AssemblyBbif1897B · Contighaploid
Genome composition2 453 605 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 24 · HK 11 · RR 13CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key