1 Response_reg#1
4-104 aa · 101 aa · 45.9% of protein
Raw token
Response_reg:4:1.41e-23:104:101:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
B5782_RS06125
Response regulator NarL family
Bifidobacterium catenulatum · GCF_002075855
ClassRRTypeNarLLength220 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002075855#B5782_RS06125Stable P2CS identifier used across views.
GenomeGCF_002075855Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length220 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage157 / 220 aa (71.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa220 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
159-214 aa · 56 aa · 25.5% of protein
Raw token
HTH_LUXR:159:2.58e-21:214:56:58- Raw architecture: Response_reg:4:1.41e-23:104:101:111#HTH_LUXR:159:2.58e-21:214:56:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002075855::NZ_NAQA01000003.1::G00010
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1002787-1004768Genomic interval covered by the local TCS group.
Identifiers
Old locus tagB5782_1191RefSeq proteinWP_080788669.1
Context group ID
GCF_002075855::NZ_NAQA01000003.1::G00010Context members
B5782_RS06125B5782_RS06130
Partner locus tags
B5782_RS06125B5782_RS06130
Partner old locus tags
B5782_1191B5782_1192
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_080788669.1Primary protein accession used for annex mappings.
UniProt accessionA0A1V8PRG1Primary UniProt accession resolved in the annex database.
UniProt IDA0A1V8PRG1_9BIFIDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagB5782_RS06125Primary locus identifier stored in the genes table.
Old locus tagB5782_1191Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NAQA01000003.1Sequence record reported by the local genomic context database.
Genomic interval1 002 787-1 003 449 nt663 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 002 787-1 004 768 ntGCF_002075855::NZ_NAQA01000003.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002075855::NZ_NAQA01000003.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NAQA01000003.1All displayed genes belong to this local TCS context.
Neighborhood span1 002 787-1 004 768 nt1 982 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 002 787 nt1 004 768 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
B5782_RS06125GCF_002075855#B5782_RS06125
RRNarLCurrent focus
1 002 787-1 003 449 nt · Reverse (-)
B5782_RS06130GCF_002075855#B5782_RS06130
HKClassic
1 003 446-1 004 768 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002075855#B5782_RS06125The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1729539
Simplified PFAM architecture for RROC_1729539
PFAM domain coverage: 156 / 220 aa (70.9%)
1 aa220 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[4-105] | GerE[161-214]
- Domain count: 2
- Matched identifier: RROC_1729539
- Positioned domains: Response_reg 4-105 ; Response_reg 4-105 ; GerE 161-214 ; GerE 161-214
Cluster members and taxonomy
Representative gene: GCF_002075855#B5782_RS06125
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 686 · GCF_002075855
AssemblyBbif1899B · Contighaploid
Genome composition2 124 599 bp · 56,5% GCBifidobacterium catenulatum
Signal transduction countsGenes 21 · HK 9 · RR 10CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key