1 HAMP#1
1-45 aa · 45 aa · 15.3% of protein
Raw token
HAMP:1:0.000000175:45:45:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BW894_RS26765
Histidine kinase, Classic
Bacillus mycoides · GCF_002021835
ClassHKTypeClassicLength294 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002021835#BW894_RS26765Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length294 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage220 / 294 aa (74.8%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa294 aa
Domain-by-domain annotation3 items
2 HisKA#2
56-123 aa · 68 aa · 23.1% of protein
Raw token
HisKA:56:0.000000000000193:123:68:643 HATPase_c#3
174-280 aa · 107 aa · 36.4% of protein
Raw token
HATPase_c:174:5.59e-30:280:107:109- Raw architecture: HAMP:1:0.000000175:45:45:69#HisKA:56:0.000000000000193:123:68:64#HATPase_c:174:5.59e-30:280:107:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002021835::NZ_MUAN01000072.1::G00061
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span1-886Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBW894_26740RefSeq proteinWP_139367941.1
Context group ID
GCF_002021835::NZ_MUAN01000072.1::G00061Context members
BW894_RS26765
Partner locus tags
BW894_RS26765
Partner old locus tags
BW894_26740
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_139367941.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBW894_RS26765Primary locus identifier stored in the genes table.
Old locus tagBW894_26740Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MUAN01000072.1Sequence record reported by the local genomic context database.
Genomic interval1-886 nt886 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1-886 ntGCF_002021835::NZ_MUAN01000072.1::G00061
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002021835::NZ_MUAN01000072.1::G00061Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MUAN01000072.1All displayed genes belong to this local TCS context.
Neighborhood span1-886 nt886 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt886 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BW894_RS26765GCF_002021835#BW894_RS26765
HKClassicCurrent focus
1-886 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003925#BMYCO0001_RS26570Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1583983
Simplified PFAM architecture for HKOC_1583983
PFAM domain coverage: 224 / 484 aa (46.3%)
1 aa484 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[184-234] | HisKA[247-312] | HATPase_c[364-470]
- Domain count: 3
- Matched identifier: HKOC_1583983
- Positioned domains: HAMP 184-234 ; HisKA 247-312 ; HATPase_c 364-470
Cluster members and taxonomy
Representative gene: GCF_000003925#BMYCO0001_RS26570
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_002021835
AssemblyASM202183v1 · Contighaploid
Genome composition5 190 710 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 125 · HK 67 · RR 58CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key