1 HisKA_3#1
405-465 aa · 61 aa · 9.9% of protein
Raw token
HisKA_3:405:0.00000267:465:65:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BGP34_RS17860
Histidine kinase, Classic
Bacillus mycoides · GCF_002014715
ClassHKTypeClassicLength616 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002014715#BGP34_RS17860Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length616 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage156 / 616 aa (25.3%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa616 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
508-602 aa · 95 aa · 15.4% of protein
Raw token
HATPase_c:508:1.4e-20:602:105:109- Raw architecture: HisKA_3:405:0.00000267:465:65:68#HATPase_c:508:1.4e-20:602:105:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002014715::NZ_MUAR01000018.1::G00017
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1-2431Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBGP34_17875RefSeq proteinWP_078214082.1
Context group ID
GCF_002014715::NZ_MUAR01000018.1::G00017Context members
BGP34_RS17860BGP34_RS17865
Partner locus tags
BGP34_RS17860BGP34_RS17865
Partner old locus tags
BGP34_17875BGP34_17880
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_078214082.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBGP34_RS17860Primary locus identifier stored in the genes table.
Old locus tagBGP34_17875Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MUAR01000018.1Sequence record reported by the local genomic context database.
Genomic interval1-1 851 nt1 851 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1-2 431 ntGCF_002014715::NZ_MUAR01000018.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002014715::NZ_MUAR01000018.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MUAR01000018.1All displayed genes belong to this local TCS context.
Neighborhood span1-2 431 nt2 431 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt2 431 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BGP34_RS17860GCF_002014715#BGP34_RS17860
HKClassicCurrent focus
1-1 851 nt · Forward (+)
BGP34_RS17865GCF_002014715#BGP34_RS17865
RRNarL
1 823-2 431 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000517985#C174_RS09180Use this link to inspect the representative gene detail.
PFAM architectureHATPase_c1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_0745544
Simplified PFAM architecture for HKOC_0745544
PFAM domain coverage: 95 / 713 aa (13.3%)
1 aa713 aa
HATPase_c
- Simplified architecture: HATPase_c
- Raw architecture: HATPase_c[605-699]
- Domain count: 1
- Matched identifier: HKOC_0745544
- Positioned domains: HATPase_c 605-699
Cluster members and taxonomy
Representative gene: GCF_000517985#C174_RS09180
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_002014715
AssemblyASM201471v1 · Contighaploid
Genome composition5 956 998 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 135 · HK 72 · RR 63CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key