1 Response_reg#1
4-116 aa · 113 aa · 56.5% of protein
Raw token
Response_reg:4:2.42e-26:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BGP34_RS10405
Response regulator NarL family
Bacillus mycoides · GCF_002014715
ClassRRTypeNarLLength200 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002014715#BGP34_RS10405Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length200 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage169 / 200 aa (84.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HTH_LUXR#2
139-194 aa · 56 aa · 28.0% of protein
Raw token
HTH_LUXR:139:2.95e-20:194:56:58- Raw architecture: Response_reg:4:2.42e-26:116:113:111#HTH_LUXR:139:2.95e-20:194:56:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002014715::NZ_MUAR01000007.1::G00072
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span109931-111660Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBGP34_10425RefSeq proteinWP_002089785.1
Context group ID
GCF_002014715::NZ_MUAR01000007.1::G00072Context members
BGP34_RS10405BGP34_RS10410
Partner locus tags
BGP34_RS10405BGP34_RS10410
Partner old locus tags
BGP34_10425BGP34_10430
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002089785.1Primary protein accession used for annex mappings.
UniProt accessionJ8HTT9Primary UniProt accession resolved in the annex database.
UniProt IDJ8HTT9_BACCEDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBGP34_RS10405Primary locus identifier stored in the genes table.
Old locus tagBGP34_10425Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MUAR01000007.1Sequence record reported by the local genomic context database.
Genomic interval109 931-110 533 nt603 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span109 931-111 660 ntGCF_002014715::NZ_MUAR01000007.1::G00072
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002014715::NZ_MUAR01000007.1::G00072Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MUAR01000007.1All displayed genes belong to this local TCS context.
Neighborhood span109 931-111 660 nt1 730 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
109 931 nt111 660 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BGP34_RS10405GCF_002014715#BGP34_RS10405
RRNarLCurrent focus
109 931-110 533 nt · Reverse (-)
BGP34_RS10410GCF_002014715#BGP34_RS10410
HKClassic
110 530-111 660 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003925#BMYCO0001_RS23670Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2134438
Simplified PFAM architecture for RROC_2134438
PFAM domain coverage: 169 / 200 aa (84.5%)
1 aa200 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[4-116] | GerE[139-194]
- Domain count: 2
- Matched identifier: RROC_2134438
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; GerE 139-194 ; GerE 139-194
Cluster members and taxonomy
Representative gene: GCF_000003925#BMYCO0001_RS23670
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_002014715
AssemblyASM201471v1 · Contighaploid
Genome composition5 956 998 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 135 · HK 72 · RR 63CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key