1 Response_reg#1
4-113 aa · 110 aa · 49.3% of protein
Raw token
Response_reg:4:2.23e-36:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BLX04_RS18370
Response regulator OmpR family
Bacillus mycoides · GCF_002014655
ClassRRTypeOmpRLength223 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002014655#BLX04_RS18370Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 223 aa (84.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
143-220 aa · 78 aa · 35.0% of protein
Raw token
Trans_reg_C:143:5.28e-27:220:78:77- Raw architecture: Response_reg:4:2.23e-36:113:111:111#Trans_reg_C:143:5.28e-27:220:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002014655::NZ_MUAS01000012.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span55735-57947Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBLX04_18350RefSeq proteinWP_002010439.1
Context group ID
GCF_002014655::NZ_MUAS01000012.1::G00006Context members
BLX04_RS18365BLX04_RS18370
Partner locus tags
BLX04_RS18365BLX04_RS18370
Partner old locus tags
BLX04_18345BLX04_18350
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002010439.1Primary protein accession used for annex mappings.
UniProt accessionR8HP58Primary UniProt accession resolved in the annex database.
UniProt IDR8HP58_BACCEDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBLX04_RS18370Primary locus identifier stored in the genes table.
Old locus tagBLX04_18350Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MUAS01000012.1Sequence record reported by the local genomic context database.
Genomic interval57 276-57 947 nt672 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span55 735-57 947 ntGCF_002014655::NZ_MUAS01000012.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002014655::NZ_MUAS01000012.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MUAS01000012.1All displayed genes belong to this local TCS context.
Neighborhood span55 735-57 947 nt2 213 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
55 735 nt57 947 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BLX04_RS18365GCF_002014655#BLX04_RS18365
HKClassic
55 735-57 198 nt · Reverse (-)
BLX04_RS18370GCF_002014655#BLX04_RS18370
RROmpRCurrent focus
57 276-57 947 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003925#BMYCO0001_RS02545Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1586791
Simplified PFAM architecture for RROC_1586791
PFAM domain coverage: 187 / 223 aa (83.9%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[143-219]
- Domain count: 2
- Matched identifier: RROC_1586791
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 143-219 ; Trans_reg_C 143-219
Cluster members and taxonomy
Representative gene: GCF_000003925#BMYCO0001_RS02545
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_002014655
AssemblyASM201465v1 · Contighaploid
Genome composition5 482 614 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 120 · HK 63 · RR 57CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key