1 Response_reg#1
6-115 aa · 110 aa · 49.8% of protein
Raw token
Response_reg:6:1.14e-34:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BW892_RS28090
Response regulator OmpR family
Bacillus cereus · GCF_002014575
ClassRRTypeOmpRLength221 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002014575#BW892_RS28090Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length221 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage180 / 221 aa (81.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa221 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
150-219 aa · 70 aa · 31.7% of protein
Raw token
Trans_reg_C:150:6.86e-30:219:75:77- Raw architecture: Response_reg:6:1.14e-34:115:111:111#Trans_reg_C:150:6.86e-30:219:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002014575::NZ_MUAL01000153.1::G00012
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3826-5956Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBW892_28180RefSeq proteinWP_078182268.1
Context group ID
GCF_002014575::NZ_MUAL01000153.1::G00012Context members
BW892_RS28085BW892_RS28090
Partner locus tags
BW892_RS28085BW892_RS28090
Partner old locus tags
BW892_28175BW892_28180
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_078182268.1Primary protein accession used for annex mappings.
UniProt accessionA0A1S9U3K9Primary UniProt accession resolved in the annex database.
UniProt IDA0A1S9U3K9_BACCEDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBW892_RS28090Primary locus identifier stored in the genes table.
Old locus tagBW892_28180Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MUAL01000153.1Sequence record reported by the local genomic context database.
Genomic interval5 291-5 956 nt666 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 826-5 956 ntGCF_002014575::NZ_MUAL01000153.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002014575::NZ_MUAL01000153.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MUAL01000153.1All displayed genes belong to this local TCS context.
Neighborhood span3 826-5 956 nt2 131 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 826 nt5 956 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BW892_RS28085GCF_002014575#BW892_RS28085
HKClassic
3 826-5 298 nt · Reverse (-)
BW892_RS28090GCF_002014575#BW892_RS28090
RROmpRCurrent focus
5 291-5 956 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002014575#BW892_RS28090The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1684360
Simplified PFAM architecture for RROC_1684360
PFAM domain coverage: 178 / 221 aa (80.5%)
1 aa221 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-114] | Trans_reg_C[150-218]
- Domain count: 2
- Matched identifier: RROC_1684360
- Positioned domains: Response_reg 6-114 ; Response_reg 6-114 ; Trans_reg_C 150-218 ; Trans_reg_C 150-218
Cluster members and taxonomy
Representative gene: GCF_002014575#BW892_RS28090
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 396 · GCF_002014575
AssemblyASM201457v1 · Contighaploid
Genome composition5 668 335 bp · 35,0% GCBacillus cereus
Signal transduction countsGenes 114 · HK 63 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key