1 Response_reg#1
1-78 aa · 78 aa · 45.6% of protein
Raw token
Response_reg:1:1.36e-30:78:79:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BW891_RS29680
Response regulator OmpR family
Bacillus mycoides · GCF_002014545
ClassRRTypeOmpRLength171 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002014545#BW891_RS29680Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length171 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage134 / 171 aa (78.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa171 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
116-171 aa · 56 aa · 32.7% of protein
Raw token
Trans_reg_C:116:1.83e-22:171:56:77- Raw architecture: Response_reg:1:1.36e-30:78:79:111#Trans_reg_C:116:1.83e-22:171:56:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002014545::NZ_MUAK01000367.1::G00065
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1-515Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBW891_29675RefSeq proteinWP_033731031.1
Context group ID
GCF_002014545::NZ_MUAK01000367.1::G00065Context members
BW891_RS29680
Partner locus tags
BW891_RS29680
Partner old locus tags
BW891_29675
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_033731031.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBW891_RS29680Primary locus identifier stored in the genes table.
Old locus tagBW891_29675Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MUAK01000367.1Sequence record reported by the local genomic context database.
Genomic interval1-515 nt515 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1-515 ntGCF_002014545::NZ_MUAK01000367.1::G00065
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002014545::NZ_MUAK01000367.1::G00065Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MUAK01000367.1All displayed genes belong to this local TCS context.
Neighborhood span1-515 nt515 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt515 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BW891_RS29680GCF_002014545#BW891_RS29680
RROmpRCurrent focus
1-515 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003925#BMYCO0001_RS26325Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1301501
Simplified PFAM architecture for RROC_1301501
PFAM domain coverage: 186 / 228 aa (81.6%)
1 aa228 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-114] | Trans_reg_C[152-227]
- Domain count: 2
- Matched identifier: RROC_1301501
- Positioned domains: Response_reg 5-114 ; Response_reg 5-114 ; Trans_reg_C 152-227 ; Trans_reg_C 152-227
Cluster members and taxonomy
Representative gene: GCF_000003925#BMYCO0001_RS26325
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_002014545
AssemblyASM201454v1 · Contighaploid
Genome composition5 641 761 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 139 · HK 73 · RR 65CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key