1 Response_reg#1
6-115 aa · 110 aa · 52.6% of protein
Raw token
Response_reg:6:5.6e-35:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BW891_RS29535
Response regulator OmpR family
Bacillus mycoides · GCF_002014545
ClassRRTypeOmpRLength209 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002014545#BW891_RS29535Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length209 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage165 / 209 aa (78.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa209 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
150-204 aa · 55 aa · 26.3% of protein
Raw token
Trans_reg_C:150:7.54e-25:204:55:77- Raw architecture: Response_reg:6:5.6e-35:115:111:111#Trans_reg_C:150:7.54e-25:204:55:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002014545::NZ_MUAK01000347.1::G00063
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span223-850Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBW891_29530RefSeq proteinWP_078179314.1
Context group ID
GCF_002014545::NZ_MUAK01000347.1::G00063Context members
BW891_RS29535
Partner locus tags
BW891_RS29535
Partner old locus tags
BW891_29530
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_078179314.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBW891_RS29535Primary locus identifier stored in the genes table.
Old locus tagBW891_29530Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MUAK01000347.1Sequence record reported by the local genomic context database.
Genomic interval223-850 nt628 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span223-850 ntGCF_002014545::NZ_MUAK01000347.1::G00063
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002014545::NZ_MUAK01000347.1::G00063Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MUAK01000347.1All displayed genes belong to this local TCS context.
Neighborhood span223-850 nt628 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
223 nt850 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BW891_RS29535GCF_002014545#BW891_RS29535
RROmpRCurrent focus
223-850 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003925#BMYCO0001_RS12010Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1677545
Simplified PFAM architecture for RROC_1677545
PFAM domain coverage: 178 / 221 aa (80.5%)
1 aa221 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-114] | Trans_reg_C[150-218]
- Domain count: 2
- Matched identifier: RROC_1677545
- Positioned domains: Response_reg 6-114 ; Response_reg 6-114 ; Trans_reg_C 150-218 ; Trans_reg_C 150-218
Cluster members and taxonomy
Representative gene: GCF_000003925#BMYCO0001_RS12010
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_002014545
AssemblyASM201454v1 · Contighaploid
Genome composition5 641 761 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 139 · HK 73 · RR 65CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key