1 HAMP#1
2-55 aa · 54 aa · 18.8% of protein
Raw token
HAMP:2:0.00000172:55:54:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BW891_RS29330
Histidine kinase, Classic
Bacillus mycoides · GCF_002014545
ClassHKTypeClassicLength288 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002014545#BW891_RS29330Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length288 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage217 / 288 aa (75.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa288 aa
Domain-by-domain annotation3 items
2 HisKA#2
67-130 aa · 64 aa · 22.2% of protein
Raw token
HisKA:67:0.0000000000000193:130:64:643 HATPase_c#3
179-277 aa · 99 aa · 34.4% of protein
Raw token
HATPase_c:179:7.28e-17:277:99:109- Raw architecture: HAMP:2:0.00000172:55:54:69#HisKA:67:0.0000000000000193:130:64:64#HATPase_c:179:7.28e-17:277:99:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002014545::NZ_MUAK01000317.1::G00057
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span516-1383Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBW891_29325RefSeq proteinWP_078179300.1
Context group ID
GCF_002014545::NZ_MUAK01000317.1::G00057Context members
BW891_RS29330
Partner locus tags
BW891_RS29330
Partner old locus tags
BW891_29325
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_078179300.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBW891_RS29330Primary locus identifier stored in the genes table.
Old locus tagBW891_29325Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MUAK01000317.1Sequence record reported by the local genomic context database.
Genomic interval516-1 383 nt868 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span516-1 383 ntGCF_002014545::NZ_MUAK01000317.1::G00057
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002014545::NZ_MUAK01000317.1::G00057Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MUAK01000317.1All displayed genes belong to this local TCS context.
Neighborhood span516-1 383 nt868 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
516 nt1 383 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BW891_RS29330GCF_002014545#BW891_RS29330
HKClassicCurrent focus
516-1 383 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002118195#S3E15_RS25030Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2753918
Simplified PFAM architecture for HKOC_2753918
PFAM domain coverage: 210 / 359 aa (58.5%)
1 aa359 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[83-125] | HisKA[138-201] | HATPase_c[251-353]
- Domain count: 3
- Matched identifier: HKOC_2753918
- Positioned domains: HAMP 83-125 ; HisKA 138-201 ; HATPase_c 251-353
Cluster members and taxonomy
Representative gene: GCF_002118195#S3E15_RS25030
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_002014545
AssemblyASM201454v1 · Contighaploid
Genome composition5 641 761 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 139 · HK 73 · RR 65CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key