1 HAMP#1
174-243 aa · 70 aa · 14.5% of protein
Raw token
HAMP:174:7.77e-17:243:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BW900_RS10475
Histidine kinase, Classic
Bacillus mycoides · GCF_002014535
ClassHKTypeClassicLength484 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002014535#BW900_RS10475Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length484 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage249 / 484 aa (51.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa484 aa
Domain-by-domain annotation3 items
2 HisKA#2
255-319 aa · 65 aa · 13.4% of protein
Raw token
HisKA:255:3.37e-16:319:65:643 HATPase_c#3
367-480 aa · 114 aa · 23.6% of protein
Raw token
HATPase_c:367:1.95e-29:480:114:109- Raw architecture: HAMP:174:7.77e-17:243:70:69#HisKA:255:3.37e-16:319:65:64#HATPase_c:367:1.95e-29:480:114:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002014535::NZ_MUAI01000005.1::G00058
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span193162-195307Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBW900_10480RefSeq proteinWP_002129434.1
Context group ID
GCF_002014535::NZ_MUAI01000005.1::G00058Context members
BW900_RS10470BW900_RS10475
Partner locus tags
BW900_RS10470BW900_RS10475
Partner old locus tags
BW900_10475BW900_10480
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002129434.1Primary protein accession used for annex mappings.
UniProt accessionA0A1S9TBH4Primary UniProt accession resolved in the annex database.
UniProt IDA0A1S9TBH4_BACMYDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBW900_RS10475Primary locus identifier stored in the genes table.
Old locus tagBW900_10480Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MUAI01000005.1Sequence record reported by the local genomic context database.
Genomic interval193 853-195 307 nt1 455 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span193 162-195 307 ntGCF_002014535::NZ_MUAI01000005.1::G00058
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002014535::NZ_MUAI01000005.1::G00058Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MUAI01000005.1All displayed genes belong to this local TCS context.
Neighborhood span193 162-195 307 nt2 146 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
193 162 nt195 307 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BW900_RS10470GCF_002014535#BW900_RS10470
RROmpR
193 162-193 851 nt · Reverse (-)
BW900_RS10475GCF_002014535#BW900_RS10475
HKClassicCurrent focus
193 853-195 307 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000290695#IKM_RS04470Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1584282
Simplified PFAM architecture for HKOC_1584282
PFAM domain coverage: 227 / 484 aa (46.9%)
1 aa484 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[191-243] | HisKA[255-319] | HATPase_c[370-478]
- Domain count: 3
- Matched identifier: HKOC_1584282
- Positioned domains: HAMP 191-243 ; HisKA 255-319 ; HATPase_c 370-478
Cluster members and taxonomy
Representative gene: GCF_000290695#IKM_RS04470
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_002014535
AssemblyASM201453v1 · Contighaploid
Genome composition6 068 254 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 124 · HK 67 · RR 57CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key