1 Response_reg#1
4-113 aa · 110 aa · 48.9% of protein
Raw token
Response_reg:4:4e-37:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BW898_RS13245
Response regulator OmpR family
Bacillus cereus · GCF_002014485
ClassRRTypeOmpRLength225 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002014485#BW898_RS13245Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length225 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 225 aa (83.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa225 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
143-220 aa · 78 aa · 34.7% of protein
Raw token
Trans_reg_C:143:2.51e-27:220:78:77- Raw architecture: Response_reg:4:4e-37:113:111:111#Trans_reg_C:143:2.51e-27:220:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002014485::NZ_MUAG01000008.1::G00054
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span69433-71492Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBW898_13255RefSeq proteinWP_078173830.1
Context group ID
GCF_002014485::NZ_MUAG01000008.1::G00054Context members
BW898_RS13245BW898_RS13250
Partner locus tags
BW898_RS13245BW898_RS13250
Partner old locus tags
BW898_13255BW898_13260
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_078173830.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBW898_RS13245Primary locus identifier stored in the genes table.
Old locus tagBW898_13255Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MUAG01000008.1Sequence record reported by the local genomic context database.
Genomic interval69 433-70 110 nt678 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span69 433-71 492 ntGCF_002014485::NZ_MUAG01000008.1::G00054
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002014485::NZ_MUAG01000008.1::G00054Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MUAG01000008.1All displayed genes belong to this local TCS context.
Neighborhood span69 433-71 492 nt2 060 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
69 433 nt71 492 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BW898_RS13245GCF_002014485#BW898_RS13245
RROmpRCurrent focus
69 433-70 110 nt · Forward (+)
BW898_RS13250GCF_002014485#BW898_RS13250
HKClassic
70 122-71 492 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002014485#BW898_RS13245The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1474610
Simplified PFAM architecture for RROC_1474610
PFAM domain coverage: 186 / 225 aa (82.7%)
1 aa225 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[144-219]
- Domain count: 2
- Matched identifier: RROC_1474610
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 144-219 ; Trans_reg_C 144-219
Cluster members and taxonomy
Representative gene: GCF_002014485#BW898_RS13245
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 396 · GCF_002014485
AssemblyASM201448v1 · Contighaploid
Genome composition5 132 411 bp · 35,5% GCBacillus cereus
Signal transduction countsGenes 105 · HK 57 · RR 48CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key