1 Response_reg#1
20-136 aa · 117 aa · 71.8% of protein
Raw token
Response_reg:20:1.28e-29:136:117:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DO83_RS16535
Response regulator, CheY family
Anaerostipes hadrus · GCF_001998765
ClassRRTypeCheYLength163 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001998765#DO83_RS16535Stable P2CS identifier used across views.
GenomeGCF_001998765Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length163 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage117 / 163 aa (71.8%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa163 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:20:1.28e-29:136:117:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001998765::NZ_CP012098.1::G00032
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2484723-2487639Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_001998765::NZ_CP012098.1::G00032Context members
DO83_RS12475DO83_RS16535
Partner locus tags
DO83_RS12475DO83_RS16535
Partner old locus tags
DO83_12225
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_242950121.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDO83_RS16535Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CP012098.1Sequence record reported by the local genomic context database.
Genomic interval2 487 148-2 487 639 nt492 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 484 723-2 487 639 ntGCF_001998765::NZ_CP012098.1::G00032
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001998765::NZ_CP012098.1::G00032Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP012098.1All displayed genes belong to this local TCS context.
Neighborhood span2 484 723-2 487 639 nt2 917 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 484 723 nt2 487 639 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DO83_RS12475GCF_001998765#DO83_RS12475
HKClassic
2 484 723-2 487 185 nt · Forward (+)
DO83_RS16535GCF_001998765#DO83_RS16535
RRCheYCurrent focus
2 487 148-2 487 639 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001998765#DO83_RS16535The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2205009
Simplified PFAM architecture for RROC_2205009
PFAM domain coverage: 117 / 163 aa (71.8%)
1 aa163 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[20-136]
- Domain count: 1
- Matched identifier: RROC_2205009
- Positioned domains: Response_reg 20-136 ; Response_reg 20-136
Cluster members and taxonomy
Representative gene: GCF_001998765#DO83_RS16535
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 649 756 · GCF_001998765
AssemblyASM199876v1 · Complete Genomehaploid
Genome composition3 172 613 bp · 37,5% GCAnaerostipes hadrus
Signal transduction countsGenes 67 · HK 34 · RR 32CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key