1 Response_reg#1
5-109 aa · 105 aa · 43.6% of protein
Raw token
Response_reg:5:0.00000000000000813:109:107:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DO83_RS14825
Response regulator LytTR family
Anaerostipes hadrus · GCF_001998765
ClassRRTypeLytTRLength241 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001998765#DO83_RS14825Stable P2CS identifier used across views.
GenomeGCF_001998765Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length241 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage196 / 241 aa (81.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa241 aa
Domain-by-domain annotation2 items
2 LytTR#2
144-234 aa · 91 aa · 37.8% of protein
Raw token
LytTR:144:7.36e-16:234:96:98- Raw architecture: Response_reg:5:0.00000000000000813:109:107:111#LytTR:144:7.36e-16:234:96:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001998765::NZ_CP012098.1::G00036
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span2997182-2997907Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDO83_14550RefSeq proteinWP_077327440.1
Context group ID
GCF_001998765::NZ_CP012098.1::G00036Context members
DO83_RS14825
Partner locus tags
DO83_RS14825
Partner old locus tags
DO83_14550
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_077327440.1Primary protein accession used for annex mappings.
UniProt accessionA0A1Q2CAA7Primary UniProt accession resolved in the annex database.
UniProt IDA0A1Q2CAA7_ANAHADisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDO83_RS14825Primary locus identifier stored in the genes table.
Old locus tagDO83_14550Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP012098.1Sequence record reported by the local genomic context database.
Genomic interval2 997 182-2 997 907 nt726 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 997 182-2 997 907 ntGCF_001998765::NZ_CP012098.1::G00036
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001998765::NZ_CP012098.1::G00036Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP012098.1All displayed genes belong to this local TCS context.
Neighborhood span2 997 182-2 997 907 nt726 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 997 182 nt2 997 907 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DO83_RS14825GCF_001998765#DO83_RS14825
RRLytTRCurrent focus
2 997 182-2 997 907 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001998765#DO83_RS14825The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0866134
Simplified PFAM architecture for RROC_0866134
PFAM domain coverage: 203 / 241 aa (84.2%)
1 aa241 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[5-117] | LytTR[144-233]
- Domain count: 2
- Matched identifier: RROC_0866134
- Positioned domains: Response_reg 5-117 ; Response_reg 5-117 ; LytTR 144-233 ; LytTR 144-233
Cluster members and taxonomy
Representative gene: GCF_001998765#DO83_RS14825
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 649 756 · GCF_001998765
AssemblyASM199876v1 · Complete Genomehaploid
Genome composition3 172 613 bp · 37,5% GCAnaerostipes hadrus
Signal transduction countsGenes 67 · HK 34 · RR 32CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key