1 SBP_bac_3#1
44-260 aa · 217 aa · 26.5% of protein
Raw token
SBP_bac_3:44:2.2e-32:260:227:224P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DO83_RS12475
Histidine kinase, Classic
Anaerostipes hadrus · GCF_001998765
ClassHKTypeClassicLength820 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001998765#DO83_RS12475Stable P2CS identifier used across views.
GenomeGCF_001998765Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
SBP_bac_3HisKAHATPase_c
Protein length820 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage610 / 820 aa (74.4%)Merged over positioned domains only.
Domain description2 SBP_bac_3,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa820 aa
Domain-by-domain annotation4 items
2 SBP_bac_3#2
282-486 aa · 205 aa · 25.0% of protein
Raw token
SBP_bac_3:282:0.000000000000115:486:220:2243 HisKA#3
571-639 aa · 69 aa · 8.4% of protein
Raw token
HisKA:571:1.29e-18:639:69:644 HATPase_c#4
685-803 aa · 119 aa · 14.5% of protein
Raw token
HATPase_c:685:2.41e-30:803:119:109- Raw architecture: SBP_bac_3:44:2.2e-32:260:227:224#SBP_bac_3:282:0.000000000000115:486:220:224#HisKA:571:1.29e-18:639:69:64#HATPase_c:685:2.41e-30:803:119:109
- Domain description: 2 SBP_bac_3,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001998765::NZ_CP012098.1::G00032
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2484723-2487639Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDO83_12225RefSeq proteinWP_077327026.1
Context group ID
GCF_001998765::NZ_CP012098.1::G00032Context members
DO83_RS12475DO83_RS16535
Partner locus tags
DO83_RS12475DO83_RS16535
Partner old locus tags
DO83_12225
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_077327026.1Primary protein accession used for annex mappings.
UniProt accessionA0A1Q2C946Primary UniProt accession resolved in the annex database.
UniProt IDA0A1Q2C946_ANAHADisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDO83_RS12475Primary locus identifier stored in the genes table.
Old locus tagDO83_12225Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP012098.1Sequence record reported by the local genomic context database.
Genomic interval2 484 723-2 487 185 nt2 463 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 484 723-2 487 639 ntGCF_001998765::NZ_CP012098.1::G00032
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001998765::NZ_CP012098.1::G00032Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP012098.1All displayed genes belong to this local TCS context.
Neighborhood span2 484 723-2 487 639 nt2 917 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 484 723 nt2 487 639 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DO83_RS12475GCF_001998765#DO83_RS12475
HKClassicCurrent focus
2 484 723-2 487 185 nt · Forward (+)
DO83_RS16535GCF_001998765#DO83_RS16535
RRCheY
2 487 148-2 487 639 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001998765#DO83_RS12475The current gene is the representative for this cluster.
PFAM architectureSBP_bac_3 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0529825
Simplified PFAM architecture for HKOC_0529825
PFAM domain coverage: 401 / 820 aa (48.9%)
1 aa820 aa
SBP_bac_3HisKAHATPase_c
- Simplified architecture: SBP_bac_3 + HisKA + HATPase_c
- Raw architecture: SBP_bac_3[45-260] | HisKA[571-639] | HATPase_c[686-801]
- Domain count: 3
- Matched identifier: HKOC_0529825
- Positioned domains: SBP_bac_3 45-260 ; HisKA 571-639 ; HATPase_c 686-801
Cluster members and taxonomy
Representative gene: GCF_001998765#DO83_RS12475
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 649 756 · GCF_001998765
AssemblyASM199876v1 · Complete Genomehaploid
Genome composition3 172 613 bp · 37,5% GCAnaerostipes hadrus
Signal transduction countsGenes 67 · HK 34 · RR 32CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key