1 Response_reg#1
4-89 aa · 86 aa · 36.8% of protein
Raw token
Response_reg:4:0.00000000000471:89:86:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DO83_RS08830
Response regulator LytTR family
Anaerostipes hadrus · GCF_001998765
ClassRRTypeLytTRLength234 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001998765#DO83_RS08830Stable P2CS identifier used across views.
GenomeGCF_001998765Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage176 / 234 aa (75.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa234 aa
Domain-by-domain annotation2 items
2 LytTR#2
138-227 aa · 90 aa · 38.5% of protein
Raw token
LytTR:138:2.17e-19:227:96:98- Raw architecture: Response_reg:4:0.00000000000471:89:86:111#LytTR:138:2.17e-19:227:96:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001998765::NZ_CP012098.1::G00023
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1756009-1756713Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDO83_08630RefSeq proteinWP_158520185.1
Context group ID
GCF_001998765::NZ_CP012098.1::G00023Context members
DO83_RS08830
Partner locus tags
DO83_RS08830
Partner old locus tags
DO83_08630
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_158520185.1Primary protein accession used for annex mappings.
UniProt accessionA0A1Q2C7B7Primary UniProt accession resolved in the annex database.
UniProt IDA0A1Q2C7B7_ANAHADisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDO83_RS08830Primary locus identifier stored in the genes table.
Old locus tagDO83_08630Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP012098.1Sequence record reported by the local genomic context database.
Genomic interval1 756 009-1 756 713 nt705 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 756 009-1 756 713 ntGCF_001998765::NZ_CP012098.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001998765::NZ_CP012098.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP012098.1All displayed genes belong to this local TCS context.
Neighborhood span1 756 009-1 756 713 nt705 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 756 009 nt1 756 713 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DO83_RS08830GCF_001998765#DO83_RS08830
RRLytTRCurrent focus
1 756 009-1 756 713 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001998765#DO83_RS08830The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1052873
Simplified PFAM architecture for RROC_1052873
PFAM domain coverage: 199 / 234 aa (85.0%)
1 aa234 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-116] | LytTR[140-225]
- Domain count: 2
- Matched identifier: RROC_1052873
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; LytTR 140-225 ; LytTR 140-225
Cluster members and taxonomy
Representative gene: GCF_001998765#DO83_RS08830
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 649 756 · GCF_001998765
AssemblyASM199876v1 · Complete Genomehaploid
Genome composition3 172 613 bp · 37,5% GCAnaerostipes hadrus
Signal transduction countsGenes 67 · HK 34 · RR 32CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key