1 Response_reg#1
6-115 aa · 110 aa · 47.4% of protein
Raw token
Response_reg:6:4.82e-35:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DO83_RS08570
Response regulator OmpR family
Anaerostipes hadrus · GCF_001998765
ClassRRTypeOmpRLength232 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001998765#DO83_RS08570Stable P2CS identifier used across views.
GenomeGCF_001998765Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length232 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 232 aa (80.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa232 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-229 aa · 77 aa · 33.2% of protein
Raw token
Trans_reg_C:153:1.02e-22:229:77:77- Raw architecture: Response_reg:6:4.82e-35:115:111:111#Trans_reg_C:153:1.02e-22:229:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001998765::NZ_CP012098.1::G00021
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1691757-1694424Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDO83_08375RefSeq proteinWP_008392170.1
Context group ID
GCF_001998765::NZ_CP012098.1::G00021Context members
DO83_RS08565DO83_RS08570
Partner locus tags
DO83_RS08565DO83_RS08570
Partner old locus tags
DO83_08370DO83_08375
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_008392170.1Primary protein accession used for annex mappings.
UniProt accessionA0ABV1IR47Primary UniProt accession resolved in the annex database.
UniProt IDA0ABV1IR47_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDO83_RS08570Primary locus identifier stored in the genes table.
Old locus tagDO83_08375Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP012098.1Sequence record reported by the local genomic context database.
Genomic interval1 693 726-1 694 424 nt699 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 691 757-1 694 424 ntGCF_001998765::NZ_CP012098.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001998765::NZ_CP012098.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP012098.1All displayed genes belong to this local TCS context.
Neighborhood span1 691 757-1 694 424 nt2 668 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 691 757 nt1 694 424 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DO83_RS08565GCF_001998765#DO83_RS08565
HKClassic
1 691 757-1 693 733 nt · Forward (+)
DO83_RS08570GCF_001998765#DO83_RS08570
RROmpRCurrent focus
1 693 726-1 694 424 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000210695#CL2_RS02390Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1120126
Simplified PFAM architecture for RROC_1120126
PFAM domain coverage: 186 / 232 aa (80.2%)
1 aa232 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-115] | Trans_reg_C[154-229]
- Domain count: 2
- Matched identifier: RROC_1120126
- Positioned domains: Response_reg 6-115 ; Response_reg 6-115 ; Trans_reg_C 154-229 ; Trans_reg_C 154-229
Cluster members and taxonomy
Representative gene: GCF_000210695#CL2_RS02390
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 649 756 · GCF_001998765
AssemblyASM199876v1 · Complete Genomehaploid
Genome composition3 172 613 bp · 37,5% GCAnaerostipes hadrus
Signal transduction countsGenes 67 · HK 34 · RR 32CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key