1 Response_reg#1
7-120 aa · 114 aa · 41.9% of protein
Raw token
Response_reg:7:0.000000000156:120:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DO83_RS00255
Response regulator Spo0A family
Anaerostipes hadrus · GCF_001998765
ClassRRTypeSpo0ALength272 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_001998765#DO83_RS00255Stable P2CS identifier used across views.
GenomeGCF_001998765Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
Response_regSpo0A_C
Protein length272 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage218 / 272 aa (80.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Spo0A_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa272 aa
Domain-by-domain annotation2 items
2 Spo0A_C#2
160-263 aa · 104 aa · 38.2% of protein
Raw token
Spo0A_C:160:2.82e-62:263:104:104- Raw architecture: Response_reg:7:0.000000000156:120:115:111#Spo0A_C:160:2.82e-62:263:104:104
- Domain description: 1 Response_reg,1 Spo0A_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_001998765::NZ_CP012098.1::G00001
Group size33 locus tags listed below.
HK / RR0 / 3Counts resolved for the local TCS neighborhood.
Context span54345-56895Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDO83_00255RefSeq proteinWP_077325092.1
Context group ID
GCF_001998765::NZ_CP012098.1::G00001Context members
DO83_RS00250DO83_RS00255DO83_RS00260
Partner locus tags
DO83_RS00250DO83_RS00255DO83_RS00260
Partner old locus tags
DO83_00250DO83_00255DO83_00260
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_077325092.1Primary protein accession used for annex mappings.
UniProt accessionA0A1Q2C399Primary UniProt accession resolved in the annex database.
UniProt IDA0A1Q2C399_ANAHADisplay identifier provided by UniProt.
GO / PubMed8 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDO83_RS00255Primary locus identifier stored in the genes table.
Old locus tagDO83_00255Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP012098.1Sequence record reported by the local genomic context database.
Genomic interval55 229-56 068 nt840 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span54 345-56 895 ntGCF_001998765::NZ_CP012098.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001998765::NZ_CP012098.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP012098.1All displayed genes belong to this local TCS context.
Neighborhood span54 345-56 895 nt2 551 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
54 345 nt56 895 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
DO83_RS00250GCF_001998765#DO83_RS00250
RRSpo0A
54 345-55 160 nt · Reverse (-)
DO83_RS00255GCF_001998765#DO83_RS00255
RRSpo0ACurrent focus
55 229-56 068 nt · Reverse (-)
DO83_RS00260GCF_001998765#DO83_RS00260
RRSpo0A
56 089-56 895 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001998765#DO83_RS00255The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Spo0A_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0610232
Simplified PFAM architecture for RROC_0610232
PFAM domain coverage: 217 / 272 aa (79.8%)
1 aa272 aa
Response_regSpo0A_C
- Simplified architecture: Response_reg + Spo0A_C
- Raw architecture: Response_reg[7-119] | Spo0A_C[160-263]
- Domain count: 2
- Matched identifier: RROC_0610232
- Positioned domains: Response_reg 7-119 ; Response_reg 7-119 ; Spo0A_C 160-263 ; Spo0A_C 160-263
Cluster members and taxonomy
Representative gene: GCF_001998765#DO83_RS00255
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 649 756 · GCF_001998765
AssemblyASM199876v1 · Complete Genomehaploid
Genome composition3 172 613 bp · 37,5% GCAnaerostipes hadrus
Signal transduction countsGenes 67 · HK 34 · RR 32CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key