1 Response_reg#1
15-117 aa · 103 aa · 63.6% of protein
Raw token
Response_reg:15:0.00000000000715:117:103:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BBL520_RS11380
Response regulator, CheY family
Bifidobacterium breve · GCF_001990225
ClassRRTypeCheYLength162 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001990225#BBL520_RS11380Stable P2CS identifier used across views.
GenomeGCF_001990225Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length162 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage103 / 162 aa (63.6%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa162 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:15:0.00000000000715:117:103:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001990225::NZ_CP019596.1::G00001
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span86180-86668Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_001990225::NZ_CP019596.1::G00001Context members
BBL520_RS11380
Partner locus tags
BBL520_RS11380
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_253702694.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBBL520_RS11380Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CP019596.1Sequence record reported by the local genomic context database.
Genomic interval86 180-86 668 nt489 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span86 180-86 668 ntGCF_001990225::NZ_CP019596.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001990225::NZ_CP019596.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP019596.1All displayed genes belong to this local TCS context.
Neighborhood span86 180-86 668 nt489 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
86 180 nt86 668 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BBL520_RS11380GCF_001990225#BBL520_RS11380
RRCheYCurrent focus
86 180-86 668 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001990225#BBL520_RS11380The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2205891
Simplified PFAM architecture for RROC_2205891
PFAM domain coverage: 106 / 162 aa (65.4%)
1 aa162 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[15-120]
- Domain count: 1
- Matched identifier: RROC_2205891
- Positioned domains: Response_reg 15-120 ; Response_reg 15-120
Cluster members and taxonomy
Representative gene: GCF_001990225#BBL520_RS11380
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 685 · GCF_001990225
AssemblyASM199022v1 · Complete Genomehaploid
Genome composition2 403 402 bp · 59,0% GCBifidobacterium breve
Signal transduction countsGenes 23 · HK 9 · RR 12CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key