1 HisKA_3#1
215-278 aa · 64 aa · 14.2% of protein
Raw token
HisKA_3:215:0.00000000000000793:278:64:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BBL520_RS04555
Histidine kinase, Classic
Bifidobacterium breve · GCF_001990225
ClassHKTypeClassicLength450 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001990225#BBL520_RS04555Stable P2CS identifier used across views.
GenomeGCF_001990225Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length450 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 450 aa (40.7%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa450 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
325-443 aa · 119 aa · 26.4% of protein
Raw token
HATPase_c:325:0.0000000139:443:120:109- Raw architecture: HisKA_3:215:0.00000000000000793:278:64:68#HATPase_c:325:0.0000000139:443:120:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001990225::NZ_CP019596.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1040300-1042305Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBBL520_04555RefSeq proteinWP_077149471.1
Context group ID
GCF_001990225::NZ_CP019596.1::G00006Context members
BBL520_RS04550BBL520_RS04555
Partner locus tags
BBL520_RS04550BBL520_RS04555
Partner old locus tags
BBL520_04550BBL520_04555
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_077149471.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBBL520_RS04555Primary locus identifier stored in the genes table.
Old locus tagBBL520_04555Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP019596.1Sequence record reported by the local genomic context database.
Genomic interval1 040 953-1 042 305 nt1 353 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 040 300-1 042 305 ntGCF_001990225::NZ_CP019596.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001990225::NZ_CP019596.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP019596.1All displayed genes belong to this local TCS context.
Neighborhood span1 040 300-1 042 305 nt2 006 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 040 300 nt1 042 305 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BBL520_RS04550GCF_001990225#BBL520_RS04550
RRNarL
1 040 300-1 040 953 nt · Reverse (-)
BBL520_RS04555GCF_001990225#BBL520_RS04555
HKClassicCurrent focus
1 040 953-1 042 305 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001990225#BBL520_RS04555The current gene is the representative for this cluster.
PFAM architectureHisKA_31 domain in the representative PFAM annotation.
PFAM architecture for HKOC_1963896
Simplified PFAM architecture for HKOC_1963896
PFAM domain coverage: 66 / 450 aa (14.7%)
1 aa450 aa
HisKA_3
- Simplified architecture: HisKA_3
- Raw architecture: HisKA_3[215-280]
- Domain count: 1
- Matched identifier: HKOC_1963896
- Positioned domains: HisKA_3 215-280
Cluster members and taxonomy
Representative gene: GCF_001990225#BBL520_RS04555
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 685 · GCF_001990225
AssemblyASM199022v1 · Complete Genomehaploid
Genome composition2 403 402 bp · 59,0% GCBifidobacterium breve
Signal transduction countsGenes 23 · HK 9 · RR 12CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key