1 HisKA#1
124-189 aa · 66 aa · 19.2% of protein
Raw token
HisKA:124:0.000000898:189:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BER37_RS10240
Histidine kinase, Classic
Clostridioides difficile · GCF_001972195
ClassHKTypeClassicLength343 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001972195#BER37_RS10240Stable P2CS identifier used across views.
GenomeGCF_001972195Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length343 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage167 / 343 aa (48.7%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa343 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
241-341 aa · 101 aa · 29.4% of protein
Raw token
HATPase_c:241:1.59e-24:341:101:109- Raw architecture: HisKA:124:0.000000898:189:66:64#HATPase_c:241:1.59e-24:341:101:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001972195::NZ_MTWI01000001.1::G00035
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2146484-2148191Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBER37_002017RefSeq proteinWP_021393383.1
Context group ID
GCF_001972195::NZ_MTWI01000001.1::G00035Context members
BER37_RS10235BER37_RS10240
Partner locus tags
BER37_RS10235BER37_RS10240
Partner old locus tags
BER37_002016BER37_002017
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_021393383.1Primary protein accession used for annex mappings.
UniProt accessionA0A9P3YMR6Primary UniProt accession resolved in the annex database.
UniProt IDA0A9P3YMR6_CLODIDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBER37_RS10240Primary locus identifier stored in the genes table.
Old locus tagBER37_002017Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MTWI01000001.1Sequence record reported by the local genomic context database.
Genomic interval2 147 160-2 148 191 nt1 032 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 146 484-2 148 191 ntGCF_001972195::NZ_MTWI01000001.1::G00035
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001972195::NZ_MTWI01000001.1::G00035Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MTWI01000001.1All displayed genes belong to this local TCS context.
Neighborhood span2 146 484-2 148 191 nt1 708 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 146 484 nt2 148 191 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BER37_RS10235GCF_001972195#BER37_RS10235
RROmpR
2 146 484-2 147 170 nt · Forward (+)
BER37_RS10240GCF_001972195#BER37_RS10240
HKClassicCurrent focus
2 147 160-2 148 191 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000210395#CDM68_RS10115Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2827823
Simplified PFAM architecture for HKOC_2827823
PFAM domain coverage: 173 / 343 aa (50.4%)
1 aa343 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[124-189] | HATPase_c[236-342]
- Domain count: 2
- Matched identifier: HKOC_2827823
- Positioned domains: HisKA 124-189 ; HATPase_c 236-342
Cluster members and taxonomy
Representative gene: GCF_000210395#CDM68_RS10115
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_001972195
AssemblyASM197219v1 · Contighaploid
Genome composition4 278 990 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 100 · HK 48 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key