1 HisKA#1
118-178 aa · 61 aa · 18.3% of protein
Raw token
HisKA:118:0.00000187:178:63:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BER34_RS11685
Histidine kinase, Classic
Clostridioides difficile · GCF_001972115
ClassHKTypeClassicLength334 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001972115#BER34_RS11685Stable P2CS identifier used across views.
GenomeGCF_001972115Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length334 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage169 / 334 aa (50.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
224-331 aa · 108 aa · 32.3% of protein
Raw token
HATPase_c:224:8.92e-25:331:108:109- Raw architecture: HisKA:118:0.00000187:178:63:64#HATPase_c:224:8.92e-25:331:108:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001972115::NZ_MTVX01000001.1::G00036
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2523331-2525033Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBER34_002313RefSeq proteinWP_003420057.1
Context group ID
GCF_001972115::NZ_MTVX01000001.1::G00036Context members
BER34_RS11680BER34_RS11685
Partner locus tags
BER34_RS11680BER34_RS11685
Partner old locus tags
BER34_002312BER34_002313
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003420057.1Primary protein accession used for annex mappings.
UniProt accessionD5Q6L6Primary UniProt accession resolved in the annex database.
UniProt IDD5Q6L6_CLODIDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBER34_RS11685Primary locus identifier stored in the genes table.
Old locus tagBER34_002313Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MTVX01000001.1Sequence record reported by the local genomic context database.
Genomic interval2 524 029-2 525 033 nt1 005 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 523 331-2 525 033 ntGCF_001972115::NZ_MTVX01000001.1::G00036
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001972115::NZ_MTVX01000001.1::G00036Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MTVX01000001.1All displayed genes belong to this local TCS context.
Neighborhood span2 523 331-2 525 033 nt1 703 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 523 331 nt2 525 033 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BER34_RS11680GCF_001972115#BER34_RS11680
RROmpR
2 523 331-2 524 005 nt · Forward (+)
BER34_RS11685GCF_001972115#BER34_RS11685
HKClassicCurrent focus
2 524 029-2 525 033 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000155065#QAE_RS0207585Use this link to inspect the representative gene detail.
PFAM architectureHATPase_c1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2849763
Simplified PFAM architecture for HKOC_2849763
PFAM domain coverage: 108 / 334 aa (32.3%)
1 aa334 aa
HATPase_c
- Simplified architecture: HATPase_c
- Raw architecture: HATPase_c[224-331]
- Domain count: 1
- Matched identifier: HKOC_2849763
- Positioned domains: HATPase_c 224-331
Cluster members and taxonomy
Representative gene: GCF_000155065#QAE_RS0207585
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_001972115
AssemblyASM197211v1 · Contighaploid
Genome composition4 010 693 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 97 · HK 48 · RR 49CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key