1 HAMP#1
166-232 aa · 67 aa · 14.3% of protein
Raw token
HAMP:166:0.00000418:232:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BER38_RS09765
Histidine kinase, Classic
Clostridioides difficile · GCF_001972105
ClassHKTypeClassicLength467 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001972105#BER38_RS09765Stable P2CS identifier used across views.
GenomeGCF_001972105Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length467 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage242 / 467 aa (51.8%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa467 aa
Domain-by-domain annotation3 items
2 HisKA#2
245-312 aa · 68 aa · 14.6% of protein
Raw token
HisKA:245:0.0000000000000245:312:68:643 HATPase_c#3
359-465 aa · 107 aa · 22.9% of protein
Raw token
HATPase_c:359:1.19e-26:465:108:109- Raw architecture: HAMP:166:0.00000418:232:69:69#HisKA:245:0.0000000000000245:312:68:64#HATPase_c:359:1.19e-26:465:108:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001972105::NZ_MTVZ01000002.1::G00025
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span82861-84993Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBER38_001923RefSeq proteinWP_011861297.1
Context group ID
GCF_001972105::NZ_MTVZ01000002.1::G00025Context members
BER38_RS09760BER38_RS09765
Partner locus tags
BER38_RS09760BER38_RS09765
Partner old locus tags
BER38_001922BER38_001923
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_011861297.1Primary protein accession used for annex mappings.
UniProt accessionQ186M9Primary UniProt accession resolved in the annex database.
UniProt IDQ186M9_CLOD6Display identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBER38_RS09765Primary locus identifier stored in the genes table.
Old locus tagBER38_001923Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MTVZ01000002.1Sequence record reported by the local genomic context database.
Genomic interval83 590-84 993 nt1 404 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span82 861-84 993 ntGCF_001972105::NZ_MTVZ01000002.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001972105::NZ_MTVZ01000002.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MTVZ01000002.1All displayed genes belong to this local TCS context.
Neighborhood span82 861-84 993 nt2 133 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
82 861 nt84 993 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BER38_RS09760GCF_001972105#BER38_RS09760
RROmpR
82 861-83 586 nt · Forward (+)
BER38_RS09765GCF_001972105#BER38_RS09765
HKClassicCurrent focus
83 590-84 993 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000009205#CD630_RS09115Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1747620
Simplified PFAM architecture for HKOC_1747620
PFAM domain coverage: 172 / 467 aa (36.8%)
1 aa467 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[245-309] | HATPase_c[359-465]
- Domain count: 2
- Matched identifier: HKOC_1747620
- Positioned domains: HisKA 245-309 ; HATPase_c 359-465
Cluster members and taxonomy
Representative gene: GCF_000009205#CD630_RS09115
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_001972105
AssemblyASM197210v1 · Contighaploid
Genome composition4 200 115 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 97 · HK 47 · RR 50CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key