1 HisKA#1
123-170 aa · 48 aa · 14.4% of protein
Raw token
HisKA:123:0.000000679:170:53:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BER35_RS15400
Histidine kinase, Classic
Clostridioides difficile · GCF_001972065
ClassHKTypeClassicLength334 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001972065#BER35_RS15400Stable P2CS identifier used across views.
GenomeGCF_001972065Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length334 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage157 / 334 aa (47.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
216-324 aa · 109 aa · 32.6% of protein
Raw token
HATPase_c:216:8.53e-24:324:109:109- Raw architecture: HisKA:123:0.000000679:170:53:64#HATPase_c:216:8.53e-24:324:109:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001972065::NZ_MTWE01000004.1::G00042
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2928617-2930323Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBER35_003030RefSeq proteinWP_003422603.1
Context group ID
GCF_001972065::NZ_MTWE01000004.1::G00042Context members
BER35_RS15400BER35_RS15405
Partner locus tags
BER35_RS15400BER35_RS15405
Partner old locus tags
BER35_003030BER35_003031
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003422603.1Primary protein accession used for annex mappings.
UniProt accessionA0AAX3GZU6Primary UniProt accession resolved in the annex database.
UniProt IDA0AAX3GZU6_CLODIDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBER35_RS15400Primary locus identifier stored in the genes table.
Old locus tagBER35_003030Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MTWE01000004.1Sequence record reported by the local genomic context database.
Genomic interval2 928 617-2 929 621 nt1 005 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 928 617-2 930 323 ntGCF_001972065::NZ_MTWE01000004.1::G00042
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001972065::NZ_MTWE01000004.1::G00042Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MTWE01000004.1All displayed genes belong to this local TCS context.
Neighborhood span2 928 617-2 930 323 nt1 707 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 928 617 nt2 930 323 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BER35_RS15400GCF_001972065#BER35_RS15400
HKClassicCurrent focus
2 928 617-2 929 621 nt · Reverse (-)
BER35_RS15405GCF_001972065#BER35_RS15405
RROmpR
2 929 631-2 930 323 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000210435#CDM120_RS15135Use this link to inspect the representative gene detail.
PFAM architectureHATPase_c1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2849780
Simplified PFAM architecture for HKOC_2849780
PFAM domain coverage: 109 / 334 aa (32.6%)
1 aa334 aa
HATPase_c
- Simplified architecture: HATPase_c
- Raw architecture: HATPase_c[217-325]
- Domain count: 1
- Matched identifier: HKOC_2849780
- Positioned domains: HATPase_c 217-325
Cluster members and taxonomy
Representative gene: GCF_000210435#CDM120_RS15135
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_001972065
AssemblyASM197206v1 · Contighaploid
Genome composition4 057 973 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 97 · HK 48 · RR 49CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key