1 HisKA#1
77-135 aa · 59 aa · 20.5% of protein
Raw token
HisKA:77:0.0000000000000529:135:59:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BER29_RS19415
Histidine kinase, Classic
Clostridioides difficile · GCF_001972015
ClassHKTypeClassicLength288 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001972015#BER29_RS19415Stable P2CS identifier used across views.
GenomeGCF_001972015Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length288 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage158 / 288 aa (54.9%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa288 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
188-286 aa · 99 aa · 34.4% of protein
Raw token
HATPase_c:188:1.16e-18:286:100:109- Raw architecture: HisKA:77:0.0000000000000529:135:59:64#HATPase_c:188:1.16e-18:286:100:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001972015::NZ_MTVR01000004.1::G00061
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span460-1326Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBER29_003812RefSeq proteinWP_235639970.1
Context group ID
GCF_001972015::NZ_MTVR01000004.1::G00061Context members
BER29_RS19415
Partner locus tags
BER29_RS19415
Partner old locus tags
BER29_003812
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_235639970.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBER29_RS19415Primary locus identifier stored in the genes table.
Old locus tagBER29_003812Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MTVR01000004.1Sequence record reported by the local genomic context database.
Genomic interval460-1 326 nt867 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span460-1 326 ntGCF_001972015::NZ_MTVR01000004.1::G00061
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001972015::NZ_MTVR01000004.1::G00061Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MTVR01000004.1All displayed genes belong to this local TCS context.
Neighborhood span460-1 326 nt867 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
460 nt1 326 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BER29_RS19415GCF_001972015#BER29_RS19415
HKClassicCurrent focus
460-1 326 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003215#QAC_RS0202430Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2503237
Simplified PFAM architecture for HKOC_2503237
PFAM domain coverage: 162 / 393 aa (41.2%)
1 aa393 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[179-240] | HATPase_c[292-391]
- Domain count: 2
- Matched identifier: HKOC_2503237
- Positioned domains: HisKA 179-240 ; HATPase_c 292-391
Cluster members and taxonomy
Representative gene: GCF_000003215#QAC_RS0202430
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_001972015
AssemblyASM197201v1 · Contighaploid
Genome composition4 179 937 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 107 · HK 51 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key