1 Response_reg#1
5-109 aa · 105 aa · 43.6% of protein
Raw token
Response_reg:5:1.73e-28:109:106:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BER31_RS09435
Response regulator OmpR family
Clostridioides difficile · GCF_001971985
ClassRRTypeOmpRLength241 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001971985#BER31_RS09435Stable P2CS identifier used across views.
GenomeGCF_001971985Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length241 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 241 aa (75.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa241 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
160-236 aa · 77 aa · 32.0% of protein
Raw token
Trans_reg_C:160:8.95e-31:236:77:77- Raw architecture: Response_reg:5:1.73e-28:109:106:111#Trans_reg_C:160:8.95e-31:236:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001971985::NZ_MTWA01000007.1::G00026
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1530225-1532357Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBER31_001858RefSeq proteinWP_021364494.1
Context group ID
GCF_001971985::NZ_MTWA01000007.1::G00026Context members
BER31_RS09435BER31_RS09440
Partner locus tags
BER31_RS09435BER31_RS09440
Partner old locus tags
BER31_001858BER31_001859
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_021364494.1Primary protein accession used for annex mappings.
UniProt accessionA0A9X8RHV2Primary UniProt accession resolved in the annex database.
UniProt IDA0A9X8RHV2_CLODIDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBER31_RS09435Primary locus identifier stored in the genes table.
Old locus tagBER31_001858Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MTWA01000007.1Sequence record reported by the local genomic context database.
Genomic interval1 530 225-1 530 950 nt726 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 530 225-1 532 357 ntGCF_001971985::NZ_MTWA01000007.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001971985::NZ_MTWA01000007.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MTWA01000007.1All displayed genes belong to this local TCS context.
Neighborhood span1 530 225-1 532 357 nt2 133 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 530 225 nt1 532 357 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BER31_RS09435GCF_001971985#BER31_RS09435
RROmpRCurrent focus
1 530 225-1 530 950 nt · Forward (+)
BER31_RS09440GCF_001971985#BER31_RS09440
HKClassic
1 530 954-1 532 357 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_004318625#E0R02_RS15285Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0811393
Simplified PFAM architecture for RROC_0811393
PFAM domain coverage: 184 / 244 aa (75.4%)
1 aa244 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[8-114] | Trans_reg_C[163-239]
- Domain count: 2
- Matched identifier: RROC_0811393
- Positioned domains: Response_reg 8-114 ; Response_reg 8-114 ; Trans_reg_C 163-239 ; Trans_reg_C 163-239
Cluster members and taxonomy
Representative gene: GCF_004318625#E0R02_RS15285
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_001971985
AssemblyASM197198v1 · Contighaploid
Genome composition4 259 046 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 97 · HK 46 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key