1 Response_reg#1
4-112 aa · 109 aa · 47.4% of protein
Raw token
Response_reg:4:1.85e-33:112:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BER41_RS04530
Response regulator OmpR family
Clostridioides difficile · GCF_001971945
ClassRRTypeOmpRLength230 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001971945#BER41_RS04530Stable P2CS identifier used across views.
GenomeGCF_001971945Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length230 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 230 aa (80.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
150-226 aa · 77 aa · 33.5% of protein
Raw token
Trans_reg_C:150:7.01e-30:226:77:77- Raw architecture: Response_reg:4:1.85e-33:112:110:111#Trans_reg_C:150:7.01e-30:226:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001971945::NZ_MTVW01000001.1::G00015
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span942450-944074Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBER41_000879RefSeq proteinWP_021368943.1
Context group ID
GCF_001971945::NZ_MTVW01000001.1::G00015Context members
BER41_RS04530BER41_RS04535
Partner locus tags
BER41_RS04530BER41_RS04535
Partner old locus tags
BER41_000879BER41_000880
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_021368943.1Primary protein accession used for annex mappings.
UniProt accessionA0A6N3BAP6Primary UniProt accession resolved in the annex database.
UniProt IDA0A6N3BAP6_CLODIDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBER41_RS04530Primary locus identifier stored in the genes table.
Old locus tagBER41_000879Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MTVW01000001.1Sequence record reported by the local genomic context database.
Genomic interval942 450-943 142 nt693 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span942 450-944 074 ntGCF_001971945::NZ_MTVW01000001.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001971945::NZ_MTVW01000001.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MTVW01000001.1All displayed genes belong to this local TCS context.
Neighborhood span942 450-944 074 nt1 625 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
942 450 nt944 074 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BER41_RS04530GCF_001971945#BER41_RS04530
RROmpRCurrent focus
942 450-943 142 nt · Forward (+)
BER41_RS04535GCF_001971945#BER41_RS04535
HKClassic
943 139-944 074 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000235905#HMPREF9945_RS09130Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1200791
Simplified PFAM architecture for RROC_1200791
PFAM domain coverage: 186 / 230 aa (80.9%)
1 aa230 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[150-226]
- Domain count: 2
- Matched identifier: RROC_1200791
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 150-226 ; Trans_reg_C 150-226
Cluster members and taxonomy
Representative gene: GCF_000235905#HMPREF9945_RS09130
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_001971945
AssemblyASM197194v1 · Contighaploid
Genome composition4 093 719 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 100 · HK 48 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key